UHGV-1386786

Genome information

Genome length 30,316 bps

CDS count 46

Completeness 71.98% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-1386786
vOTU ID	vOTU-029989
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0213139
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.93
Jumbo phage	No

Genome content
Genome length	30,316 bps
GC content	52.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.72%
Average CDS length	601.76 bps
tRNA count	3
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1386786_1	KOfam	K01870	IARS, ileS; isoleucyl-tRNA synthetase [EC:6.1.1.5]	NA
UHGV-1386786_1	PHROG	phrog_12710	NA	unknown function
UHGV-1386786_1	UniRef90	UniRef90_UPI00125FC5A3	class I tRNA ligase family protein	NA
UHGV-1386786_1	eggNOG-mapper	411476.BACOVA_02540	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)	NA
UHGV-1386786_1	COG	COG0060	Isoleucyl-tRNA synthetase	NA
UHGV-1386786_2	PHROG	phrog_20016	NA	unknown function
UHGV-1386786_2	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1386786_2	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1386786_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1386786_4	PHROG	phrog_16490	NA	unknown function
UHGV-1386786_4	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1386786_5	PHROG	phrog_22984	NA	unknown function
UHGV-1386786_6	PHROG	phrog_21718	NA	unknown function
UHGV-1386786_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1386786_7	PHROG	phrog_3754	NA	unknown function
UHGV-1386786_7	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-1386786_9	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1386786_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1386786_9	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-1386786_10	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-1386786_14	PHROG	phrog_15303	NA	unknown function
UHGV-1386786_15	PHROG	phrog_1863	NA	unknown function
UHGV-1386786_15	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-1386786_16	KOfam	K07273	acm; lysozyme	NA
UHGV-1386786_16	PHROG	phrog_291	endolysin	lysis
UHGV-1386786_16	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-1386786_16	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-1386786_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1386786_16	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1386786_16	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-1386786_17	PHROG	phrog_16313	virion structural protein	head and packaging
UHGV-1386786_17	UniRef90	UniRef90_R5BIM6	Neck passage structure protein	NA
UHGV-1386786_18	PHROG	phrog_3558	tail protein	tail
UHGV-1386786_18	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-1386786_18	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-1386786_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1386786_18	COG	COG4926	Phage-related protein	NA
UHGV-1386786_18	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1386786_19	UniRef90	UniRef90_R6QN45	Putative phage tail component domain protein	NA
UHGV-1386786_19	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-1386786_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-1386786_19	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1386786_20	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1386786_20	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-1386786_20	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-1386786_20	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1386786_20	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1386786_20	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1386786_20	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1386786_23	PHROG	phrog_885	major tail protein	tail
UHGV-1386786_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1386786_23	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-1386786_23	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-1386786_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1386786_24	Structural annotation	PF13554	NA	NA
UHGV-1386786_25	PHROG	phrog_17977	NA	unknown function
UHGV-1386786_25	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-1386786_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1386786_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-1386786_27	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-1386786_27	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1386786_27	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1386786_28	Structural annotation	PF06810	NA	NA
UHGV-1386786_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1386786_31	UniRef90	UniRef90_A0A844DDB3	HK97 gp10 family phage protein	NA
UHGV-1386786_31	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1386786_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1386786_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1386786_31	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1386786_33	PHROG	phrog_8680	NA	unknown function
UHGV-1386786_33	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-1386786_33	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1386786_33	Pfam	PF14386	NA	DUF4417
UHGV-1386786_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1386786_33	Structural annotation	PF14386	NA	NA
UHGV-1386786_35	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1386786_35	UniRef90	UniRef90_A0A844DBI4	Phage_Mu_F domain-containing protein	NA
UHGV-1386786_35	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1386786_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1386786_35	COG	COG2369	NA	NA
UHGV-1386786_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1386786_36	Structural annotation	PF08863, MF_01077	NA	NA
UHGV-1386786_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-1386786_37	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-1386786_37	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-1386786_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1386786_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1386786_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1386786_38	PHROG	phrog_10250	NA	unknown function
UHGV-1386786_38	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-1386786_38	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-1386786_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1386786_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1386786_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-1386786_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1386786_39	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1386786_39	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-1386786_39	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1386786_39	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1386786_39	Structural annotation	PF16677	NA	NA
UHGV-1386786_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1386786_40	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-1386786_40	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-1386786_40	Pfam	PF07374	NA	DUF1492
UHGV-1386786_40	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1386786_41	KOfam	K03700	recU; recombination protein U	NA
UHGV-1386786_41	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1386786_41	UniRef90	UniRef90_UPI001C036091	Holliday junction resolvase RecU	NA
UHGV-1386786_41	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1386786_41	Pfam	PF03838	Recombination protein U	RecU
UHGV-1386786_41	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1386786_42	UniRef90	UniRef90_A0A2V2F8Z8	NA	NA
UHGV-1386786_42	Pfam	PF04448	NA	DUF551
UHGV-1386786_43	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-1386786_43	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1386786_44	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1386786_44	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1386786_44	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA