UHGV-1386989

Genome information

Genome length 30,470 bps

CDS count 36

Completeness 67.23% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-1386989
vOTU ID	vOTU-034106
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0213983
BioSample	SAMEA2738108
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.01
Jumbo phage	No

Genome content
Genome length	30,470 bps
GC content	51.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	95.10%
Average CDS length	807.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1386989_1	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1386989_1	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1386989_1	UniRef90	UniRef90_A0A7H9WE26	DNA helicase	NA
UHGV-1386989_1	eggNOG-mapper	557598.LHK_01506	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-1386989_1	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1386989_1	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1386989_1	COG	COG0305	Replicative DNA helicase	NA
UHGV-1386989_1	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1386989_2	UniRef90	UniRef90_A0A7H9WFX5	Putative phage associated protein	NA
UHGV-1386989_4	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1386989_4	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1386989_4	UniRef90	UniRef90_D3A7D7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1386989_4	eggNOG-mapper	546268.NEISUBOT_05156	endodeoxyribonuclease RusA	NA
UHGV-1386989_4	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1386989_4	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1386989_4	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1386989_5	PHROG	phrog_131	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1386989_5	UniRef90	UniRef90_UPI00066ED2E0	NA	NA
UHGV-1386989_5	eggNOG-mapper	280701.Q5QF84_9CAUD	NA	NA
UHGV-1386989_5	Pfam	PF07102	Putative nuclease YbcO	YbcO
UHGV-1386989_5	Structural annotation	PF07102	NA	NA
UHGV-1386989_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1386989_6	UniRef90	UniRef90_UPI0008A63494	recombination protein NinB	NA
UHGV-1386989_6	eggNOG-mapper	546268.NEISUBOT_05157	NinB protein	NA
UHGV-1386989_6	Pfam	PF05772	NinB protein	NinB
UHGV-1386989_6	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1386989_7	eggNOG-mapper	546268.NEISUBOT_05158	NA	NA
UHGV-1386989_8	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-1386989_9	PHROG	phrog_2320	NA	unknown function
UHGV-1386989_9	UniRef90	UniRef90_UPI001661738C	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-1386989_10	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1386989_10	UniRef90	UniRef90_A0A2X1UCV0	Putative phage associated protein	NA
UHGV-1386989_10	eggNOG-mapper	669262.COK_0678	transposase activity	NA
UHGV-1386989_10	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1386989_10	Structural annotation	PF07141	NA	NA
UHGV-1386989_11	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1386989_11	UniRef90	UniRef90_UPI000D306818	phage terminase large subunit	NA
UHGV-1386989_11	eggNOG-mapper	596320.NEIFL0001_0722	Terminase RNaseH-like domain	NA
UHGV-1386989_11	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1386989_11	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1386989_11	COG	COG5362	Phage terminase large subunit	NA
UHGV-1386989_11	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1386989_12	PHROG	phrog_2662	portal protein	head and packaging
UHGV-1386989_12	UniRef90	UniRef90_UPI0002FAD906	phage head morphogenesis protein	NA
UHGV-1386989_12	eggNOG-mapper	640081.Dsui_0194	Phage portal protein	NA
UHGV-1386989_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1386989_12	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1386989_12	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1386989_12	COG	COG2369	NA	NA
UHGV-1386989_12	Structural annotation	PF04860, PF04233, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1386989_13	KOfam	K06904	NA	NA
UHGV-1386989_13	PHROG	phrog_21715	NA	unknown function
UHGV-1386989_13	UniRef90	UniRef90_A0A425B2W2	Caudovirus prohead protease	NA
UHGV-1386989_13	eggNOG-mapper	546267.NEIPOLOT_02407	Phage prohead protease, HK97 family	NA
UHGV-1386989_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1386989_13	COG	COG3740	Phage head maturation protease	NA
UHGV-1386989_14	PHROG	phrog_13692	NA	unknown function
UHGV-1386989_14	UniRef90	UniRef90_A0A5K1KK38	Phage associated protein	NA
UHGV-1386989_14	eggNOG-mapper	640081.Dsui_0196	NA	NA
UHGV-1386989_15	PHROG	phrog_26071	NA	unknown function
UHGV-1386989_15	UniRef90	UniRef90_A0A2X1UCT9	Putative phage associated protein	NA
UHGV-1386989_16	PHROG	phrog_442	head-tail adaptor	connector
UHGV-1386989_16	UniRef90	UniRef90_UPI0008A34E02	phage gp6-like head-tail connector protein	NA
UHGV-1386989_16	eggNOG-mapper	1120977.JHUX01000003_gene788	Phage gp6-like head-tail connector protein	NA
UHGV-1386989_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1386989_16	Structural annotation	TIGR02215	NA	NA
UHGV-1386989_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1386989_17	UniRef90	UniRef90_UPI00030568A0	HK97 gp10 family phage protein	NA
UHGV-1386989_17	eggNOG-mapper	1120977.JHUX01000003_gene789	Phage virion morphogenesis	NA
UHGV-1386989_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1386989_17	COG	COG5005	NA	NA
UHGV-1386989_18	PHROG	phrog_8150	NA	unknown function
UHGV-1386989_18	UniRef90	UniRef90_A0A1D3G7Z5	Phage associated protein	NA
UHGV-1386989_18	eggNOG-mapper	640081.Dsui_0200	NA	NA
UHGV-1386989_19	PHROG	phrog_8234	NA	unknown function
UHGV-1386989_19	UniRef90	UniRef90_A0A6G7AJ76	Phage associated protein	NA
UHGV-1386989_19	eggNOG-mapper	1123487.KB892867_gene968	NA	NA
UHGV-1386989_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1386989_20	PHROG	phrog_7947	NA	unknown function
UHGV-1386989_20	UniRef90	UniRef90_A0A2X1UCT5	Phage associated protein	NA
UHGV-1386989_20	eggNOG-mapper	640081.Dsui_0202	NA	NA
UHGV-1386989_21	PHROG	phrog_8018	NA	unknown function
UHGV-1386989_21	UniRef90	UniRef90_A0A378UIX9	Phage associated protein	NA
UHGV-1386989_21	eggNOG-mapper	1123487.KB892867_gene970	NA	NA
UHGV-1386989_22	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-1386989_22	UniRef90	UniRef90_A0A2X1U516	Phage associated protein	NA
UHGV-1386989_22	eggNOG-mapper	1454004.AW11_03417	NA	NA
UHGV-1386989_22	Pfam	PF09343	NA	DUF2460
UHGV-1386989_22	COG	COG5448	NA	NA
UHGV-1386989_22	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-1386989_23	PHROG	phrog_778	tail assembly protein	tail
UHGV-1386989_23	UniRef90	UniRef90_UPI001CB72066	NA	NA
UHGV-1386989_23	eggNOG-mapper	1485544.JQKP01000008_gene1691	NA	NA
UHGV-1386989_23	Pfam	PF09931	NA	DUF2163
UHGV-1386989_23	Pfam	PF09356	Phage conserved hypothetical protein BR0599	Phage_BR0599
UHGV-1386989_23	NCBIFam	TIGR02218.1	phage conserved hypothetical protein BR0599	NA
UHGV-1386989_23	COG	COG5449	NA	NA
UHGV-1386989_24	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-1386989_24	PHROG	phrog_329	minor tail protein	tail
UHGV-1386989_24	UniRef90	UniRef90_UPI0008A2DEA2	NlpC/P60 family protein	NA
UHGV-1386989_24	eggNOG-mapper	1485544.JQKP01000008_gene1692	NLP P60 protein	NA
UHGV-1386989_24	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1386989_24	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1386989_24	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-1386989_26	PHROG	phrog_1101	tail protein	tail
UHGV-1386989_26	UniRef90	UniRef90_UPI001F0CBFBC	phage tail protein	NA
UHGV-1386989_26	eggNOG-mapper	1266925.JHVX01000006_gene2075	Putative phage tail protein	NA
UHGV-1386989_26	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1386989_26	Pfam	PF09327	NA	DUF1983
UHGV-1386989_26	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1386989_29	PHROG	phrog_5084	NA	unknown function
UHGV-1386989_29	UniRef90	UniRef90_A0A378UKW8	Phage associated protein	NA
UHGV-1386989_29	eggNOG-mapper	1121351.AUAP01000011_gene1380	NA	NA
UHGV-1386989_30	PHROG	phrog_27190	NA	unknown function
UHGV-1386989_30	UniRef90	UniRef90_UPI000495C79B	tape measure protein	NA
UHGV-1386989_30	eggNOG-mapper	546264.NEIFLAOT_01370	sister chromatid segregation	NA
UHGV-1386989_30	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1386989_30	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1386989_30	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1386989_31	PHROG	phrog_16843	NA	unknown function
UHGV-1386989_31	UniRef90	UniRef90_Q5F986	Membrane protein	NA
UHGV-1386989_31	eggNOG-mapper	546268.NEISUBOT_05189	NA	NA
UHGV-1386989_31	Structural annotation	PF14936, COG3308	NA	NA
UHGV-1386989_32	PHROG	phrog_17925	NA	unknown function
UHGV-1386989_32	UniRef90	UniRef90_A0A1D3FFS5	Phage associated protein	NA
UHGV-1386989_32	eggNOG-mapper	546264.NEIFLAOT_01725	NA	NA
UHGV-1386989_33	PHROG	phrog_1259	baseplate hub subunit and tail lysozyme	tail
UHGV-1386989_33	UniRef90	UniRef90_D3A7H2	TIGR02594 family protein	NA
UHGV-1386989_33	eggNOG-mapper	546268.NEISUBOT_05191	CHAP domain	NA
UHGV-1386989_33	NCBIFam	TIGR02594.1	TIGR02594 family protein	NA
UHGV-1386989_33	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1386989_33	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-1386989_34	PHROG	phrog_4004	NA	unknown function
UHGV-1386989_34	Structural annotation	PF21611, MF_01020, TIGR03188	NA	NA
UHGV-1386989_35	PHROG	phrog_1152	Rz-like spanin	lysis
UHGV-1386989_35	UniRef90	UniRef90_Q5F6B0	Phage associated protein	NA
UHGV-1386989_35	eggNOG-mapper	546268.NEISUBOT_05195	NA	NA
UHGV-1386989_36	KOfam	K14059	int; integrase	NA
UHGV-1386989_36	PHROG	phrog_1	integrase	integration and excision
UHGV-1386989_36	UniRef90	UniRef90_A0A1F0DZT6	Tyr recombinase domain-containing protein	NA
UHGV-1386989_36	eggNOG-mapper	32042.PstZobell_12574	Belongs to the 'phage' integrase family	NA
UHGV-1386989_36	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-1386989_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1386989_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1386989_36	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA