UHGV-1387283

Genome information

vOTU vOTU-020962

Genome length 42,035 bps

CDS count 73

Completeness 62.64% (medium-quality)

geNomad score 0.9670

Prediction confidence Confident

Genome information
Genome ID	UHGV-1387283
vOTU ID	vOTU-020962
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0279011
BioSample	SAMEA2158100
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9670
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.42
Jumbo phage	No

Genome content
Genome length	42,035 bps
GC content	45.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	90.87%
Average CDS length	526.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1387283_2	PHROG	phrog_24267	NA	unknown function
UHGV-1387283_2	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-1387283_2	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-1387283_2	COG	COG4675	Phage tail collar domain	NA
UHGV-1387283_3	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-1387283_3	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-1387283_3	Structural annotation	PF05660, NF012201	NA	NA
UHGV-1387283_4	PHROG	phrog_5417	NA	unknown function
UHGV-1387283_4	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-1387283_4	eggNOG-mapper	1459636.NTE_01434	NA	NA
UHGV-1387283_4	Structural annotation	PF12571	NA	NA
UHGV-1387283_5	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-1387283_5	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1387283_5	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-1387283_6	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-1387283_6	Structural annotation	PF20387	NA	NA
UHGV-1387283_7	Structural annotation	PF20387	NA	NA
UHGV-1387283_9	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1387283_9	UniRef90	UniRef90_UPI0004838F8E	NA	NA
UHGV-1387283_9	eggNOG-mapper	1485543.JMME01000020_gene788	NA	NA
UHGV-1387283_9	Pfam	PF17236	NA	DUF5309
UHGV-1387283_9	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-1387283_10	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-1387283_12	PHROG	phrog_1216	portal protein	head and packaging
UHGV-1387283_12	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-1387283_12	eggNOG-mapper	1485543.JMME01000020_gene791	Membrane	NA
UHGV-1387283_12	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1387283_12	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1387283_13	Structural annotation	PF21621, MF_01255, NF009806, COG4766	NA	NA
UHGV-1387283_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1387283_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1387283_14	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-1387283_14	eggNOG-mapper	1401067.HMPREF0872_06820	Terminase-like family	NA
UHGV-1387283_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1387283_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-1387283_14	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1387283_15	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1387283_15	eggNOG-mapper	485915.Dret_1613	DNA-packaging protein gp3	NA
UHGV-1387283_15	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1387283_18	PHROG	phrog_16683	NA	unknown function
UHGV-1387283_18	UniRef90	UniRef90_UPI000C7E58C8	amidoligase family protein	NA
UHGV-1387283_18	eggNOG-mapper	1007096.BAGW01000006_gene1758	Putative amidoligase enzyme	NA
UHGV-1387283_18	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-1387283_18	Structural annotation	PF12224, PF15591, MF_01609, NF010044, COG2170, COG2139	NA	NA
UHGV-1387283_19	UniRef90	UniRef90_A0A523RS96	Glutamine amidotransferase type-2 domain-containing protein	NA
UHGV-1387283_19	eggNOG-mapper	1401067.HMPREF0872_03875	NA	NA
UHGV-1387283_24	UniRef90	UniRef90_D9PHN6	Plasmid related protein	NA
UHGV-1387283_24	eggNOG-mapper	1198114.AciX9_1951	NA	NA
UHGV-1387283_27	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-1387283_27	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1387283_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1387283_28	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1387283_28	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-1387283_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1387283_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1387283_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1387283_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1387283_29	UniRef90	UniRef90_A0A4R3KBL5	Single-stranded DNA-binding protein	NA
UHGV-1387283_29	eggNOG-mapper	1120985.AUMI01000012_gene5	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1387283_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1387283_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1387283_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1387283_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1387283_29	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1387283_30	PHROG	phrog_236	nucleotide kinase	other
UHGV-1387283_30	UniRef90	UniRef90_UPI001F2B3BB8	NA	NA
UHGV-1387283_30	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-1387283_30	Pfam	PF11753	NA	DUF3310
UHGV-1387283_31	KOfam	K07584	NA	NA
UHGV-1387283_31	UniRef90	UniRef90_A0A7C6RDV5	Ribosomal-processing cysteine protease Prp	NA
UHGV-1387283_31	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1387283_31	COG	COG2868	NA	NA
UHGV-1387283_32	PHROG	phrog_3878	NA	unknown function
UHGV-1387283_32	Structural annotation	PF19607	NA	NA
UHGV-1387283_34	UniRef90	UniRef90_A0A1Q6R577	NA	NA
UHGV-1387283_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1387283_35	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1387283_35	UniRef90	UniRef90_A5ZPW8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1387283_35	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-1387283_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1387283_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1387283_35	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1387283_36	eggNOG-mapper	123214.PERMA_1060	negative regulation of transcription, DNA-templated	NA
UHGV-1387283_36	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-1387283_37	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1387283_37	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1387283_37	UniRef90	UniRef90_A0A6G5YJA5	dUTPase domain-containing protein	NA
UHGV-1387283_37	eggNOG-mapper	883156.HMPREF9282_00525	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1387283_37	Pfam	PF00692	dUTPase	dUTPase
UHGV-1387283_37	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1387283_37	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1387283_37	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1387283_38	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1387283_38	UniRef90	UniRef90_A0A7M1RVN2	Putative intron-encoded HNH endonuclease	NA
UHGV-1387283_38	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1387283_38	Structural annotation	PF13392	NA	NA
UHGV-1387283_44	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-1387283_55	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1387283_55	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1387283_55	UniRef90	UniRef90_A0A3D0LZW1	Bac_DnaA domain-containing protein	NA
UHGV-1387283_55	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-1387283_55	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-1387283_55	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1387283_55	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1387283_56	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1387283_56	eggNOG-mapper	1196322.A370_04074	DnaD domain protein	NA
UHGV-1387283_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1387283_59	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1387283_59	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1387283_59	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-1387283_59	eggNOG-mapper	1196028.ALEF01000043_gene487	RecT family	NA
UHGV-1387283_59	Pfam	PF03837	RecT family	RecT
UHGV-1387283_59	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1387283_59	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1387283_59	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1387283_60	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1387283_60	UniRef90	UniRef90_UPI001CD20A9A	YqaJ viral recombinase family protein	NA
UHGV-1387283_60	eggNOG-mapper	1111454.HMPREF1250_0282	YqaJ viral recombinase family protein	NA
UHGV-1387283_60	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1387283_60	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1387283_60	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1387283_60	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1387283_63	COG	COG1388	LysM repeat	NA
UHGV-1387283_63	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-1387283_64	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1387283_64	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1387283_66	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1387283_66	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1387283_66	UniRef90	UniRef90_UPI00040A7D7B	phage antirepressor KilAC domain-containing protein	NA
UHGV-1387283_66	eggNOG-mapper	1385385.U6E9A9_9CAUD	DNA binding	NA
UHGV-1387283_66	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1387283_66	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1387283_66	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1387283_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1387283_67	UniRef90	UniRef90_A0A645E2W6	HTH cro/C1-type domain-containing protein	NA
UHGV-1387283_67	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-1387283_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1387283_67	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1387283_67	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-1387283_68	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1387283_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1387283_68	UniRef90	UniRef90_A0A1V4GF99	HTH cro/C1-type domain-containing protein	NA
UHGV-1387283_68	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-1387283_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1387283_68	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1387283_69	PHROG	phrog_87	metallo-protease	other
UHGV-1387283_69	UniRef90	UniRef90_UPI001032CAF7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1387283_69	eggNOG-mapper	679201.HMPREF9334_00293	IrrE N-terminal-like domain	NA
UHGV-1387283_69	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1387283_69	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1387283_69	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1387283_73	KOfam	K14059	int; integrase	NA
UHGV-1387283_73	PHROG	phrog_1	integrase	integration and excision
UHGV-1387283_73	UniRef90	UniRef90_R6IK00	Integrase family protein	NA
UHGV-1387283_73	eggNOG-mapper	1262914.BN533_00811	Belongs to the 'phage' integrase family	NA
UHGV-1387283_73	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1387283_73	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1387283_73	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA