UHGV-1387463

Genome information

vOTU vOTU-019023

Genome length 30,163 bps

CDS count 53

Completeness 85.77% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-1387463
vOTU ID	vOTU-019023
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0212350
BioSample	SAMEA3449177
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.19
Jumbo phage	No

Genome content
Genome length	30,163 bps
GC content	27.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.99%
Average CDS length	532.08 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1387463_1	KOfam	K14059	int; integrase	NA
UHGV-1387463_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1387463_1	UniRef90	UniRef90_UPI0015C5C81A	site-specific integrase	NA
UHGV-1387463_1	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-1387463_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1387463_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1387463_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1387463_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1387463_2	PHROG	phrog_87	metallo-protease	other
UHGV-1387463_2	UniRef90	UniRef90_UPI001C10EA02	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1387463_2	eggNOG-mapper	1499683.CCFF01000017_gene2620	Zn peptidase	NA
UHGV-1387463_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1387463_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1387463_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1387463_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1387463_4	UniRef90	UniRef90_A0A1Q6K3F1	HTH cro/C1-type domain-containing protein	NA
UHGV-1387463_4	eggNOG-mapper	632335.Calkr_0079	SMART helix-turn-helix domain protein	NA
UHGV-1387463_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1387463_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1387463_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1387463_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1387463_5	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1387463_5	UniRef90	UniRef90_A0A1Q6K3M2	HTH cro/C1-type domain-containing protein	NA
UHGV-1387463_5	eggNOG-mapper	755731.Clo1100_0531	Helix-turn-helix XRE-family like proteins	NA
UHGV-1387463_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1387463_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1387463_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1387463_6	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-1387463_8	Structural annotation	PF09114, MF_00732, TIGR04176, COG1846	NA	NA
UHGV-1387463_10	PHROG	phrog_7566	NA	unknown function
UHGV-1387463_12	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1387463_12	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1387463_12	UniRef90	UniRef90_A0A1Q6K3H0	DnaB_2 domain-containing protein	NA
UHGV-1387463_12	eggNOG-mapper	936154.STP_1298	DnaD domain protein	NA
UHGV-1387463_12	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1387463_12	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1387463_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1387463_12	Structural annotation	TIGR01714	NA	NA
UHGV-1387463_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1387463_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1387463_13	UniRef90	UniRef90_A0A1Q6K3G5	DNA helicase	NA
UHGV-1387463_13	eggNOG-mapper	1304880.JAGB01000002_gene2311	Participates in initiation and elongation during chromosome replication	NA
UHGV-1387463_13	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1387463_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1387463_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-1387463_13	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1387463_20	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1387463_20	UniRef90	UniRef90_A0A1Q6K3R6	NUMOD4 domain-containing protein	NA
UHGV-1387463_20	eggNOG-mapper	1116482.K9L511_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1387463_20	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1387463_21	eggNOG-mapper	1304866.K413DRAFT_4602	NA	NA
UHGV-1387463_22	eggNOG-mapper	1095750.HMPREF9970_0178	NA	NA
UHGV-1387463_28	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-1387463_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1387463_31	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-1387463_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1387463_34	UniRef90	UniRef90_A0A1Q6K3Q9	HNH domain-containing protein	NA
UHGV-1387463_34	eggNOG-mapper	471855.Shel_08210	endonuclease activity	NA
UHGV-1387463_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1387463_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1387463_34	Structural annotation	NF008448	NA	NA
UHGV-1387463_36	PHROG	phrog_1066	NA	unknown function
UHGV-1387463_36	eggNOG-mapper	318464.IO99_13770	NA	NA
UHGV-1387463_36	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1387463_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1387463_37	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-1387463_37	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-1387463_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1387463_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1387463_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1387463_37	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1387463_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-1387463_38	UniRef90	UniRef90_UPI000A35AB3D	phage portal protein	NA
UHGV-1387463_38	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-1387463_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1387463_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1387463_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1387463_39	KOfam	K06904	NA	NA
UHGV-1387463_39	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1387463_39	UniRef90	UniRef90_A0A7C6SI26	HK97 family phage prohead protease	NA
UHGV-1387463_39	eggNOG-mapper	1211817.CCAT010000007_gene1038	Caudovirus prohead serine protease	NA
UHGV-1387463_39	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1387463_39	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1387463_39	COG	COG3740	Phage head maturation protease	NA
UHGV-1387463_39	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1387463_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-1387463_40	UniRef90	UniRef90_A0A1I6SHI5	Phage major capsid protein, HK97 family	NA
UHGV-1387463_40	eggNOG-mapper	1382358.JHVN01000024_gene1707	Phage capsid family	NA
UHGV-1387463_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1387463_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1387463_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1387463_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1387463_41	PHROG	phrog_34916	tail fiber protein	tail
UHGV-1387463_41	eggNOG-mapper	1437610.BREU_1383	NA	NA
UHGV-1387463_42	PHROG	phrog_5223	neck protein	connector
UHGV-1387463_42	eggNOG-mapper	1382358.JHVN01000024_gene1709	NA	NA
UHGV-1387463_43	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1387463_43	eggNOG-mapper	365048.Q0H236_9CAUD	NA	NA
UHGV-1387463_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1387463_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1387463_44	UniRef90	UniRef90_A0A559U366	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-1387463_44	eggNOG-mapper	638301.HMPREF0444_1502	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1387463_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1387463_44	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1387463_45	eggNOG-mapper	1145276.T479_12220	NA	NA
UHGV-1387463_45	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1387463_46	PHROG	phrog_88	major tail protein	tail
UHGV-1387463_46	UniRef90	UniRef90_A0A1W6WCR7	Phage tail protein	NA
UHGV-1387463_46	eggNOG-mapper	663278.Ethha_1843	phage major tail protein, phi13 family	NA
UHGV-1387463_46	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-1387463_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1387463_46	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1387463_47	PHROG	phrog_709	NA	unknown function
UHGV-1387463_47	eggNOG-mapper	482234.SCAZ3_03255	NA	NA
UHGV-1387463_47	Structural annotation	PF11836	NA	NA
UHGV-1387463_48	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1387463_48	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1387463_48	UniRef90	UniRef90_A0A1Q6K3L0	Phage tail tape measure protein	NA
UHGV-1387463_48	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-1387463_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1387463_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1387463_48	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1387463_49	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1387463_49	eggNOG-mapper	548477.HMPREF0294_2478	Host cell surface-exposed lipoprotein	NA
UHGV-1387463_49	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1387463_49	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1387463_49	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-1387463_50	PHROG	phrog_13564	minor tail protein	tail
UHGV-1387463_50	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-1387463_50	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-1387463_50	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-1387463_50	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1387463_51	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-1387463_51	eggNOG-mapper	502558.EGYY_09080	lysozyme activity	NA
UHGV-1387463_51	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-1387463_51	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-1387463_51	Structural annotation	PF00652, PF19586, PF13004, NF035930, COG4379	NA	NA
UHGV-1387463_52	Structural annotation	PF20747	NA	NA
UHGV-1387463_53	UniRef90	UniRef90_A0A1Q6M1V5	Fibronectin type-III domain-containing protein	NA
UHGV-1387463_53	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA