UHGV-1387999

Genome information

Genome length 30,184 bps

CDS count 34

Completeness 68.02% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-1387999
vOTU ID	vOTU-024790
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0212456
BioSample	SAMN02334274
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.96
Jumbo phage	No

Genome content
Genome length	30,184 bps
GC content	43.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	90.85%
Average CDS length	808.06 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1387999_1	PHROG	phrog_2329	NA	unknown function
UHGV-1387999_1	UniRef90	UniRef90_A0A7C6Z4D9	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-1387999_1	Structural annotation	PF04014, NF008463, COG2336	NA	NA
UHGV-1387999_2	eggNOG-mapper	1232453.BAIF02000058_gene1618	NA	NA
UHGV-1387999_4	KOfam	K07273	acm; lysozyme	NA
UHGV-1387999_4	PHROG	phrog_291	endolysin	lysis
UHGV-1387999_4	UniRef90	UniRef90_UPI0012DFF9A0	peptidoglycan-binding protein	NA
UHGV-1387999_4	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-1387999_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1387999_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1387999_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1387999_4	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-1387999_5	PHROG	phrog_1129	holin	lysis
UHGV-1387999_5	UniRef90	UniRef90_UPI00051C9240	phage holin family protein	NA
UHGV-1387999_5	eggNOG-mapper	33035.JPJF01000043_gene995	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1387999_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1387999_5	Structural annotation	PF06946	NA	NA
UHGV-1387999_6	PHROG	phrog_4105	NA	unknown function
UHGV-1387999_6	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-1387999_7	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-1387999_7	UniRef90	UniRef90_UPI0011DCDC2D	phage tail assembly chaperone	NA
UHGV-1387999_7	eggNOG-mapper	269482.Bcep1808_1285	Phage tail assembly chaperone protein	NA
UHGV-1387999_7	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-1387999_8	PHROG	phrog_19280	NA	unknown function
UHGV-1387999_8	UniRef90	UniRef90_UPI0011DCCE24	NA	NA
UHGV-1387999_8	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-1387999_8	Pfam	PF19789	NA	DUF6273
UHGV-1387999_8	Structural annotation	PF19789	NA	NA
UHGV-1387999_11	PHROG	phrog_9886	NA	unknown function
UHGV-1387999_11	UniRef90	UniRef90_UPI00148AEE6B	phage tail protein	NA
UHGV-1387999_11	eggNOG-mapper	999413.HMPREF1094_00205	NA	NA
UHGV-1387999_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1387999_11	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1387999_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1387999_11	COG	COG4926	Phage-related protein	NA
UHGV-1387999_11	Structural annotation	PF06605, PF21466, PF21683, TIGR01665, NF033675, COG4926	NA	NA
UHGV-1387999_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1387999_12	UniRef90	UniRef90_UPI00085CD9AD	phage tail family protein	NA
UHGV-1387999_12	eggNOG-mapper	411459.RUMOBE_00925	phage tail	NA
UHGV-1387999_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-1387999_12	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1387999_14	PHROG	phrog_7940	NA	unknown function
UHGV-1387999_14	UniRef90	UniRef90_UPI001E356B20	toxin Bro	NA
UHGV-1387999_14	eggNOG-mapper	1151292.QEW_2476	BRO family, N-terminal domain	NA
UHGV-1387999_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1387999_14	COG	COG3617	Prophage antirepressor	NA
UHGV-1387999_14	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-1387999_16	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1387999_16	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1387999_16	UniRef90	UniRef90_A0A2N5NM73	Transcriptional regulator	NA
UHGV-1387999_16	eggNOG-mapper	1336241.JAEB01000026_gene897	Helix-turn-helix XRE-family like proteins	NA
UHGV-1387999_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1387999_16	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-1387999_18	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1387999_18	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1387999_18	UniRef90	UniRef90_UPI00148AEA7A	phage tail tape measure protein	NA
UHGV-1387999_18	eggNOG-mapper	1443125.Z962_p0064	phage tail tape measure protein	NA
UHGV-1387999_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1387999_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1387999_18	COG	COG1340	NA	NA
UHGV-1387999_18	Structural annotation	PF10145, PF05384, TIGR01760, COG5280	NA	NA
UHGV-1387999_19	PHROG	phrog_6280	NA	unknown function
UHGV-1387999_19	UniRef90	UniRef90_UPI00148AE9FB	esterase	NA
UHGV-1387999_19	eggNOG-mapper	1196322.A370_04058	NA	NA
UHGV-1387999_20	PHROG	phrog_6686	tail tube protein	tail
UHGV-1387999_20	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-1387999_20	eggNOG-mapper	1196322.A370_04059	NA	NA
UHGV-1387999_20	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1387999_21	PHROG	phrog_7585	NA	unknown function
UHGV-1387999_21	eggNOG-mapper	748727.CLJU_c31260	NA	NA
UHGV-1387999_21	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1387999_22	eggNOG-mapper	1304880.JAGB01000002_gene2213	NA	NA
UHGV-1387999_22	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1387999_23	UniRef90	UniRef90_UPI00148B33AB	head-tail adaptor protein	NA
UHGV-1387999_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1387999_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1387999_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1387999_24	PHROG	phrog_4020	NA	unknown function
UHGV-1387999_24	eggNOG-mapper	445335.CBN_3083	NA	NA
UHGV-1387999_25	PHROG	phrog_247	major head protein	head and packaging
UHGV-1387999_25	UniRef90	UniRef90_UPI00148B2FC3	coat protein	NA
UHGV-1387999_25	eggNOG-mapper	887325.HMPREF0381_0081	NA	NA
UHGV-1387999_25	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1387999_25	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-1387999_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1387999_26	UniRef90	UniRef90_A0A8J6TR91	Phage scaffolding protein	NA
UHGV-1387999_26	eggNOG-mapper	862517.HMPREF9225_1649	COG NOG36366 non supervised orthologous group	NA
UHGV-1387999_26	Structural annotation	PF06810	NA	NA
UHGV-1387999_27	PHROG	phrog_21401	pilot protein for DNA ejection	tail
UHGV-1387999_27	UniRef90	UniRef90_UPI0003C0D0B7	polymorphic toxin type 50 domain-containing protein	NA
UHGV-1387999_27	eggNOG-mapper	1567015.A0A0A7RUI1_9VIRU	Phage Mu protein F like protein	NA
UHGV-1387999_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-1387999_28	UniRef90	UniRef90_UPI00148AF3CA	phage portal protein	NA
UHGV-1387999_28	eggNOG-mapper	1443125.Z962_p0046	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1387999_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1387999_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1387999_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1387999_29	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1387999_29	UniRef90	UniRef90_UPI00148B18A0	PBSX family phage terminase large subunit	NA
UHGV-1387999_29	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-1387999_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1387999_29	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1387999_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1387999_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-1387999_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1387999_30	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1387999_30	UniRef90	UniRef90_UPI00148B009C	helix-turn-helix domain-containing protein	NA
UHGV-1387999_30	eggNOG-mapper	1232453.BAIF02000011_gene3351	HNH endonuclease	NA
UHGV-1387999_30	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1387999_30	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1387999_30	Structural annotation	PF07141	NA	NA
UHGV-1387999_31	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1387999_31	PHROG	phrog_3502	NA	unknown function
UHGV-1387999_31	UniRef90	UniRef90_A0A4P6LR16	LexA repressor	NA
UHGV-1387999_31	eggNOG-mapper	536227.CcarbDRAFT_2174	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1387999_31	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-1387999_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1387999_31	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-1387999_33	UniRef90	UniRef90_A0A3R6T240	NA	NA
UHGV-1387999_33	Structural annotation	PF14213	NA	NA
UHGV-1387999_34	eggNOG-mapper	515620.EUBELI_20304	NA	NA
UHGV-1387999_34	Structural annotation	MF_00637, TIGR01925, COG2172	NA	NA