UHGV-1388087

Genome information

vOTU vOTU-020234

Genome length 31,568 bps

CDS count 47

Completeness 75.75% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-1388087
vOTU ID	vOTU-020234
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0220098
BioSample	SAMEA2466967
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.51
Jumbo phage	No

Genome content
Genome length	31,568 bps
GC content	38.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.44%
Average CDS length	630.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1388087_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1388087_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1388087_1	UniRef90	UniRef90_A0A1C6I863	HTH-type transcriptional regulator immR	NA
UHGV-1388087_1	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-1388087_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1388087_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1388087_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1388087_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1388087_1	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF041951, COG1396, COG1974	NA	NA
UHGV-1388087_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1388087_2	UniRef90	UniRef90_A0A1C6I6F2	Anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-1388087_2	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-1388087_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1388087_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1388087_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1388087_4	Structural annotation	PF02796, COG2771	NA	NA
UHGV-1388087_7	PHROG	phrog_310	transposase	integration and excision
UHGV-1388087_7	UniRef90	UniRef90_A0A413QHZ6	MerR family transcriptional regulator	NA
UHGV-1388087_7	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-1388087_7	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-1388087_7	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-1388087_7	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-1388087_7	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1388087_7	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-1388087_8	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-1388087_8	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-1388087_8	UniRef90	UniRef90_A0A1G4WQZ7	AAA domain-containing protein	NA
UHGV-1388087_8	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-1388087_8	Pfam	PF13401	AAA domain	AAA_22
UHGV-1388087_8	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-1388087_8	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-1388087_11	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1388087_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1388087_11	UniRef90	UniRef90_A0A6I3PR21	Helix-turn-helix domain-containing protein	NA
UHGV-1388087_11	eggNOG-mapper	764291.STRUR_1974	Transcriptional regulator	NA
UHGV-1388087_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1388087_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1388087_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1388087_12	PHROG	phrog_5671	NA	unknown function
UHGV-1388087_12	eggNOG-mapper	621372.ACIH01000097_gene2801	NA	NA
UHGV-1388087_14	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-1388087_14	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-1388087_14	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-1388087_14	eggNOG-mapper	411902.CLOBOL_06320	toxin-antitoxin pair type II binding	NA
UHGV-1388087_14	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-1388087_14	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-1388087_14	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-1388087_15	eggNOG-mapper	742733.HMPREF9469_02889	NA	NA
UHGV-1388087_16	PHROG	phrog_286	NA	unknown function
UHGV-1388087_16	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-1388087_16	eggNOG-mapper	445972.ANACOL_00525	NA	NA
UHGV-1388087_16	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-1388087_16	Structural annotation	PF06252	NA	NA
UHGV-1388087_17	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-1388087_17	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-1388087_17	eggNOG-mapper	645991.Sgly_0530	Mor transcription activator	NA
UHGV-1388087_17	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-1388087_17	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-1388087_17	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-1388087_18	PHROG	phrog_462	lipoprotein	other
UHGV-1388087_18	eggNOG-mapper	663278.Ethha_1583	NA	NA
UHGV-1388087_19	PHROG	phrog_25462	NA	unknown function
UHGV-1388087_19	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-1388087_19	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-1388087_19	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-1388087_20	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-1388087_20	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-1388087_20	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-1388087_20	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-1388087_20	Structural annotation	PF11985	NA	NA
UHGV-1388087_21	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-1388087_21	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-1388087_21	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-1388087_21	eggNOG-mapper	883156.HMPREF9282_00720	Participates in transcription elongation, termination and antitermination	NA
UHGV-1388087_21	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-1388087_21	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-1388087_21	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-1388087_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1388087_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1388087_23	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-1388087_23	eggNOG-mapper	1105031.HMPREF1141_0088	phage terminase, large subunit, PBSX family	NA
UHGV-1388087_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1388087_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1388087_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1388087_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1388087_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-1388087_24	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-1388087_24	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-1388087_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1388087_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1388087_25	UniRef90	UniRef90_A0A3D0XA46	Phage capsid protein	NA
UHGV-1388087_25	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-1388087_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1388087_25	COG	COG2369	NA	NA
UHGV-1388087_25	Structural annotation	PF06152, PF12636	NA	NA
UHGV-1388087_27	PHROG	phrog_419	NA	unknown function
UHGV-1388087_27	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-1388087_27	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-1388087_27	Structural annotation	PF14083	NA	NA
UHGV-1388087_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1388087_28	UniRef90	UniRef90_A0A1G4WVL7	Phage minor structural protein GP20	NA
UHGV-1388087_28	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-1388087_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1388087_28	Structural annotation	PF06810	NA	NA
UHGV-1388087_29	PHROG	phrog_212	major head protein	head and packaging
UHGV-1388087_29	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-1388087_29	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-1388087_29	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1388087_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1388087_30	eggNOG-mapper	663278.Ethha_0095	NA	NA
UHGV-1388087_31	PHROG	phrog_3366	NA	unknown function
UHGV-1388087_31	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-1388087_31	Pfam	PF20536	NA	DUF6751
UHGV-1388087_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1388087_32	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-1388087_32	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-1388087_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1388087_32	Structural annotation	PF11114	NA	NA
UHGV-1388087_33	PHROG	phrog_3266	tail completion	connector
UHGV-1388087_33	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-1388087_33	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-1388087_33	Structural annotation	PF12691	NA	NA
UHGV-1388087_34	PHROG	phrog_3099	NA	unknown function
UHGV-1388087_34	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-1388087_34	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-1388087_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1388087_35	PHROG	phrog_4450	NA	unknown function
UHGV-1388087_35	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-1388087_35	eggNOG-mapper	573061.Clocel_0218	NA	NA
UHGV-1388087_35	Pfam	PF20378	NA	DUF6673
UHGV-1388087_35	Structural annotation	PF20378	NA	NA
UHGV-1388087_36	PHROG	phrog_706	NA	unknown function
UHGV-1388087_36	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-1388087_36	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-1388087_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1388087_36	Structural annotation	PF06854	NA	NA
UHGV-1388087_38	PHROG	phrog_19074	NA	unknown function
UHGV-1388087_38	UniRef90	UniRef90_A0A413QHE6	Phage tail tape measure protein	NA
UHGV-1388087_38	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-1388087_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1388087_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1388087_38	COG	COG5283	Phage-related tail protein	NA
UHGV-1388087_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1388087_39	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-1388087_39	eggNOG-mapper	411459.RUMOBE_00925	phage tail	NA
UHGV-1388087_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-1388087_39	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-1388087_40	PHROG	phrog_18110	NA	unknown function
UHGV-1388087_40	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-1388087_40	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-1388087_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1388087_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1388087_40	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1388087_40	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1388087_42	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-1388087_42	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-1388087_42	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1388087_42	Structural annotation	PF10651, PF01664	NA	NA
UHGV-1388087_44	KOfam	K07273	acm; lysozyme	NA
UHGV-1388087_44	PHROG	phrog_291	endolysin	lysis
UHGV-1388087_44	UniRef90	UniRef90_R6NXV5	Glycoside Hydrolase Family 25-like lysozyme/endolysin	NA
UHGV-1388087_44	eggNOG-mapper	657322.FPR_18260	hydrolase, family 25	NA
UHGV-1388087_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1388087_44	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1388087_44	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-1388087_45	PHROG	phrog_443	holin	lysis
UHGV-1388087_45	UniRef90	UniRef90_A0A4R1QPE5	Phage r1t holin	NA
UHGV-1388087_45	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-1388087_45	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1388087_45	Structural annotation	PF16945	NA	NA
UHGV-1388087_46	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1388087_46	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1388087_46	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1388087_46	eggNOG-mapper	742733.HMPREF9469_02855	COG COG0338 Site-specific DNA methylase	NA
UHGV-1388087_46	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-1388087_46	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1388087_46	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-1388087_46	COG	COG0338	DNA-adenine methylase	NA
UHGV-1388087_46	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-1388087_47	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1388087_47	UniRef90	UniRef90_A0A413QHG2	XRE family transcriptional regulator	NA
UHGV-1388087_47	eggNOG-mapper	411471.SUBVAR_07446	helix-turn-helix	NA
UHGV-1388087_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1388087_47	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1388087_47	Structural annotation	PF13443, NF041951, COG3655	NA	NA