UHGV-1388508

Genome information

Genome length 40,541 bps

CDS count 59

Completeness 98.01% (high-quality)

geNomad score 0.9690

Prediction confidence Confident

Genome information
Genome ID	UHGV-1388508
vOTU ID	vOTU-008757
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0271309
BioSample	SAMN02333979
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.01% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9690
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.99
Jumbo phage	No

Genome content
Genome length	40,541 bps
GC content	39.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.43%
Average CDS length	637.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1388508_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1388508_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1388508_1	UniRef90	UniRef90_A0A7T3TLB6	Putative HNH endonuclease	NA
UHGV-1388508_1	eggNOG-mapper	1453496.AT03_15280	Endonuclease	NA
UHGV-1388508_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1388508_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1388508_1	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1388508_5	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-1388508_5	PHROG	phrog_12853	NA	unknown function
UHGV-1388508_5	UniRef90	UniRef90_A0A7H4LS32	NA	NA
UHGV-1388508_5	eggNOG-mapper	1051675.G0YQI3_9CAUD	Glycosyl hydrolase 108	NA
UHGV-1388508_5	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-1388508_5	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-1388508_5	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-1388508_6	PHROG	phrog_1356	holin	lysis
UHGV-1388508_6	UniRef90	UniRef90_A0A7T3NAK6	Putative holin	NA
UHGV-1388508_6	eggNOG-mapper	1484158.PSNIH1_09125	NA	NA
UHGV-1388508_8	PHROG	phrog_824	NA	unknown function
UHGV-1388508_8	UniRef90	UniRef90_A0A7T3NAJ8	Putative VRR-NUC domain-containing protein	NA
UHGV-1388508_8	eggNOG-mapper	1121097.JCM15093_2706	VRR_NUC	NA
UHGV-1388508_15	PHROG	phrog_3022	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1388508_15	UniRef90	UniRef90_A0A7T3N8N9	Putative bifunctional DNA primase/polymerase domain protein	NA
UHGV-1388508_15	eggNOG-mapper	1329516.JPST01000011_gene368	D5 N terminal like	NA
UHGV-1388508_15	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-1388508_15	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1388508_15	Pfam	PF13148	NA	DUF3987
UHGV-1388508_15	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1388508_17	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1388508_17	Pfam	PF13479	AAA domain	AAA_24
UHGV-1388508_18	PHROG	phrog_6015	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1388508_18	eggNOG-mapper	1410620.SHLA_4c001010	NA	NA
UHGV-1388508_18	Pfam	PF05037	NA	DUF669
UHGV-1388508_19	PHROG	phrog_1990	Cas4-domain exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1388508_19	UniRef90	UniRef90_A0A7T3NAP5	Putative exonuclease	NA
UHGV-1388508_20	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1388508_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1388508_20	UniRef90	UniRef90_A0A7T3NAK2	Putative ATP-dependent helicase	NA
UHGV-1388508_20	eggNOG-mapper	1437882.AZRU01000111_gene4951	helicase superfamily c-terminal domain	NA
UHGV-1388508_20	PADLOC	PbeA_00005	PbeA	PBE
UHGV-1388508_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1388508_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1388508_20	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1388508_20	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1388508_22	KOfam	K07501	K07501; 3'-5' exonuclease	NA
UHGV-1388508_22	PHROG	phrog_403	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1388508_22	UniRef90	UniRef90_A0A7T3TKE2	DNA_pol_B_exo2 domain-containing protein	NA
UHGV-1388508_22	eggNOG-mapper	1121921.KB898706_gene3013	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB	NA
UHGV-1388508_22	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-1388508_25	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-1388508_25	UniRef90	UniRef90_A0A7T3NAH8	Putative tail tip protein	NA
UHGV-1388508_25	eggNOG-mapper	1111728.ATYS01000061_gene447	Phage-related protein, tail component	NA
UHGV-1388508_25	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1388508_25	Pfam	PF12421	Fibronectin type III protein	DUF3672
UHGV-1388508_25	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1388508_25	Structural annotation	PF09327, PF13550, PF12421, PF16323, PF14109, NF040662, NF007507, COG4733	NA	NA
UHGV-1388508_26	PHROG	phrog_18370	NA	unknown function
UHGV-1388508_26	UniRef90	UniRef90_D4P7M2	Gp004	NA
UHGV-1388508_27	PHROG	phrog_11419	tail fiber protein	tail
UHGV-1388508_27	UniRef90	UniRef90_UPI0002E4808E	SGNH/GDSL hydrolase family protein	NA
UHGV-1388508_27	eggNOG-mapper	1211112.ALJC01000006_gene15	NA	NA
UHGV-1388508_27	Pfam	PF08400	Prophage tail fibre N-terminal	phage_tail_N
UHGV-1388508_27	Structural annotation	PF00015, NF032891	NA	NA
UHGV-1388508_28	PHROG	phrog_32	tail assembly protein	tail
UHGV-1388508_28	UniRef90	UniRef90_A0A7T3TLC6	Putative lambda tail assembly protein gpI family	NA
UHGV-1388508_28	eggNOG-mapper	1279015.KB908455_gene1418	lambda tail assembly I	NA
UHGV-1388508_28	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-1388508_28	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-1388508_29	PHROG	phrog_30	minor tail protein	tail
UHGV-1388508_29	UniRef90	UniRef90_A0A7T3TL85	Putative minor tail protein	NA
UHGV-1388508_29	eggNOG-mapper	696748.ASU2_02780	Prokaryotic homologs of the JAB domain	NA
UHGV-1388508_29	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1388508_29	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-1388508_30	PHROG	phrog_18	minor tail protein	tail
UHGV-1388508_30	UniRef90	UniRef90_A0A7T3TL73	Putative tail protein	NA
UHGV-1388508_30	eggNOG-mapper	1005058.UMN179_02413	Phage minor tail protein L	NA
UHGV-1388508_30	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-1388508_30	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-1388508_30	COG	COG4672	Phage tail protein	NA
UHGV-1388508_30	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-1388508_31	PHROG	phrog_14	minor tail protein	tail
UHGV-1388508_31	UniRef90	UniRef90_A0A3P2A9Y1	Phage tail protein	NA
UHGV-1388508_31	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-1388508_31	COG	COG4718	Phage tail protein	NA
UHGV-1388508_31	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-1388508_34	PHROG	phrog_1538	tail length tape measure protein	tail
UHGV-1388508_34	UniRef90	UniRef90_A0A7T3NAG5	Putative tape measure protein	NA
UHGV-1388508_34	eggNOG-mapper	1095743.HMPREF1054_1761	Prophage tail length tape measure protein	NA
UHGV-1388508_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1388508_36	PHROG	phrog_41	major tail protein	tail
UHGV-1388508_36	UniRef90	UniRef90_A0A7T3NAH1	Putative major tail protein	NA
UHGV-1388508_36	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1388508_36	COG	COG5492	NA	NA
UHGV-1388508_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1388508_40	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1388508_40	UniRef90	UniRef90_A0A7T3TLC2	Putative head-tail connector protein	NA
UHGV-1388508_40	eggNOG-mapper	1109445.AGSX01000199_gene2950	DNA Packaging	NA
UHGV-1388508_40	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1388508_40	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1388508_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-1388508_41	UniRef90	UniRef90_A0A7T3TL80	Putative major capsid protein	NA
UHGV-1388508_41	eggNOG-mapper	406818.XBJ1_3949	capsid protein	NA
UHGV-1388508_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1388508_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1388508_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1388508_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1388508_42	KOfam	K06904	NA	NA
UHGV-1388508_42	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1388508_42	UniRef90	UniRef90_A0A7T3TL67	Putative prohead protease	NA
UHGV-1388508_42	eggNOG-mapper	339671.Asuc_1239	Caudovirus prohead serine protease	NA
UHGV-1388508_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1388508_42	COG	COG3740	Phage head maturation protease	NA
UHGV-1388508_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1388508_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-1388508_43	UniRef90	UniRef90_A0A7T3NAN7	Putative portal protein	NA
UHGV-1388508_43	eggNOG-mapper	55884.Q8SBI0_BPSF5	Phage portal protein	NA
UHGV-1388508_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1388508_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1388508_43	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1388508_44	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1388508_44	UniRef90	UniRef90_A0A7T3NAH7	Putative terminase large subunit	NA
UHGV-1388508_44	eggNOG-mapper	1453496.AT03_15265	terminase	NA
UHGV-1388508_44	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1388508_44	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1388508_44	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1388508_44	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1388508_45	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1388508_45	UniRef90	UniRef90_A0A7T3NAI2	Putative terminase small subunit	NA
UHGV-1388508_45	eggNOG-mapper	517433.PanABDRAFT_0987	phage terminase, small subunit	NA
UHGV-1388508_45	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1388508_45	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1388508_45	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1388508_45	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1388508_50	PHROG	phrog_5016	NA	unknown function
UHGV-1388508_50	eggNOG-mapper	245685.A5PJ36_9CAUD	NA	NA
UHGV-1388508_54	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1388508_54	UniRef90	UniRef90_A0A2P0PA39	Putative DNA methylase	NA
UHGV-1388508_54	eggNOG-mapper	1340534.S4X0Z8_9CAUD	methyltransferase activity	NA
UHGV-1388508_54	Structural annotation	PF03686, NF008872, COG1255	NA	NA
UHGV-1388508_56	PHROG	phrog_38350	NA	unknown function
UHGV-1388508_56	eggNOG-mapper	1141136.K4FB76_9CAUD	NA	NA