UHGV-1388532

Genome information

Genome length 30,367 bps

CDS count 53

Completeness 71.66% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-1388532
vOTU ID	vOTU-018555
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0213389
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.2
Jumbo phage	No

Genome content
Genome length	30,367 bps
GC content	53.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	95.59%
Average CDS length	551.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1388532_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1388532_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1388532_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1388532_7	COG	COG1773	Flavorubredoxin	NA
UHGV-1388532_8	PHROG	phrog_674	NA	unknown function
UHGV-1388532_8	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-1388532_8	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-1388532_8	Pfam	PF07083	NA	DUF1351
UHGV-1388532_8	Structural annotation	PF07083	NA	NA
UHGV-1388532_9	PHROG	phrog_3657	NA	unknown function
UHGV-1388532_9	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1388532_9	eggNOG-mapper	411461.DORFOR_00020	NA	NA
UHGV-1388532_10	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1388532_10	UniRef90	UniRef90_G9YN42	Metallo-beta-lactamase domain protein	NA
UHGV-1388532_10	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1388532_10	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1388532_10	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1388532_10	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1388532_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1388532_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1388532_11	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-1388532_11	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-1388532_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1388532_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1388532_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1388532_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1388532_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1388532_12	PHROG	phrog_16304	NA	unknown function
UHGV-1388532_12	UniRef90	UniRef90_A0A810PZI8	NA	NA
UHGV-1388532_12	eggNOG-mapper	1265490.JHVY01000003_gene3091	NA	NA
UHGV-1388532_12	Pfam	PF19808	NA	DUF6291
UHGV-1388532_12	Structural annotation	PF19808	NA	NA
UHGV-1388532_13	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1388532_13	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1388532_13	UniRef90	UniRef90_UPI00137A9A0F	ATP-binding protein	NA
UHGV-1388532_13	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-1388532_13	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1388532_13	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-1388532_13	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1388532_13	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-1388532_14	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1388532_14	UniRef90	UniRef90_UPI001583F66B	NA	NA
UHGV-1388532_14	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-1388532_14	Pfam	PF06356	NA	DUF1064
UHGV-1388532_14	Structural annotation	PF06356	NA	NA
UHGV-1388532_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1388532_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1388532_16	UniRef90	UniRef90_U4QYH5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1388532_16	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1388532_16	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1388532_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1388532_16	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1388532_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1388532_19	PHROG	phrog_38832	NA	unknown function
UHGV-1388532_19	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1388532_20	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1388532_20	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-1388532_20	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1388532_21	PHROG	phrog_38832	NA	unknown function
UHGV-1388532_21	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1388532_21	Structural annotation	PF11717	NA	NA
UHGV-1388532_22	PHROG	phrog_3136	NA	unknown function
UHGV-1388532_22	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1388532_22	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1388532_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1388532_22	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1388532_22	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1388532_22	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1388532_26	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-1388532_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1388532_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1388532_29	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-1388532_29	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1388532_29	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1388532_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1388532_29	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1388532_30	UniRef90	UniRef90_UPI0018AC41F1	helix-turn-helix domain-containing protein	NA
UHGV-1388532_30	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1388532_30	Structural annotation	PF04218, COG3677	NA	NA
UHGV-1388532_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1388532_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1388532_31	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1388532_31	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1388532_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1388532_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1388532_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1388532_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1388532_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1388532_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-1388532_32	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-1388532_32	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1388532_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1388532_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1388532_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1388532_33	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-1388532_33	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1388532_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1388532_33	COG	COG2369	NA	NA
UHGV-1388532_33	Structural annotation	PF06152	NA	NA
UHGV-1388532_34	Structural annotation	PF07258, MF_01194, TIGR02097	NA	NA
UHGV-1388532_35	Structural annotation	PF18152	NA	NA
UHGV-1388532_36	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-1388532_36	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-1388532_36	Structural annotation	PF06810	NA	NA
UHGV-1388532_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-1388532_37	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-1388532_37	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1388532_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1388532_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1388532_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1388532_37	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1388532_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1388532_38	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1388532_39	PHROG	phrog_3366	NA	unknown function
UHGV-1388532_39	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1388532_39	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1388532_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1388532_40	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-1388532_40	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1388532_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1388532_40	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1388532_41	PHROG	phrog_3266	tail completion	connector
UHGV-1388532_41	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1388532_41	Structural annotation	PF12691	NA	NA
UHGV-1388532_42	PHROG	phrog_3099	NA	unknown function
UHGV-1388532_42	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-1388532_42	Structural annotation	TIGR02126	NA	NA
UHGV-1388532_43	PHROG	phrog_11299	NA	unknown function
UHGV-1388532_43	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1388532_43	Structural annotation	PF10666	NA	NA
UHGV-1388532_44	PHROG	phrog_706	NA	unknown function
UHGV-1388532_44	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1388532_44	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1388532_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1388532_44	Structural annotation	PF06854	NA	NA
UHGV-1388532_45	PHROG	phrog_806	NA	unknown function
UHGV-1388532_45	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-1388532_45	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-1388532_45	Pfam	PF11611	NA	DUF4352
UHGV-1388532_45	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-1388532_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1388532_46	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1388532_46	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-1388532_46	COG	COG1511	NA	NA
UHGV-1388532_46	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1388532_47	PHROG	phrog_1194	NA	unknown function
UHGV-1388532_47	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-1388532_47	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1388532_48	PHROG	phrog_32308	NA	unknown function
UHGV-1388532_48	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-1388532_48	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-1388532_48	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-1388532_49	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-1388532_49	Structural annotation	PF14594	NA	NA
UHGV-1388532_50	Structural annotation	PF20942, NF041894, COG5456	NA	NA
UHGV-1388532_52	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-1388532_52	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1388532_53	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA