UHGV-1388857

Genome information

Genome length 30,084 bps

CDS count 53

Completeness 81.06% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1388857
vOTU ID	vOTU-034131
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0211913
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.86
Jumbo phage	No

Genome content
Genome length	30,084 bps
GC content	55.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.42%
Average CDS length	542.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1388857_1	PHROG	phrog_9534	head protein	head and packaging
UHGV-1388857_1	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-1388857_1	Structural annotation	PF21567	NA	NA
UHGV-1388857_2	PHROG	phrog_538	minor tail protein	tail
UHGV-1388857_2	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1388857_2	eggNOG-mapper	931626.Awo_c34990	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1388857_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1388857_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1388857_3	PHROG	phrog_36410	NA	unknown function
UHGV-1388857_3	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-1388857_3	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-1388857_3	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1388857_4	PHROG	phrog_23464	NA	unknown function
UHGV-1388857_4	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-1388857_4	COG	COG5283	Phage-related tail protein	NA
UHGV-1388857_4	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-1388857_6	PHROG	phrog_885	major tail protein	tail
UHGV-1388857_6	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1388857_6	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1388857_6	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1388857_7	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-1388857_7	Structural annotation	PF11367	NA	NA
UHGV-1388857_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1388857_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1388857_8	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1388857_10	PHROG	phrog_267	major head protein	head and packaging
UHGV-1388857_10	UniRef90	UniRef90_UPI001F06E68A	phage capsid protein	NA
UHGV-1388857_10	eggNOG-mapper	877414.ATWA01000001_gene909	P22 coat protein-protein 5 domain protein	NA
UHGV-1388857_10	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1388857_11	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1388857_11	Structural annotation	PF06810	NA	NA
UHGV-1388857_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1388857_12	UniRef90	UniRef90_UPI0015C5E40B	HK97 gp10 family phage protein	NA
UHGV-1388857_12	eggNOG-mapper	683837.lse_1605	NA	NA
UHGV-1388857_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1388857_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1388857_13	PHROG	phrog_35328	NA	unknown function
UHGV-1388857_14	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1388857_14	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-1388857_14	eggNOG-mapper	1235792.C808_05364	Phage minor capsid protein 2	NA
UHGV-1388857_14	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1388857_14	COG	COG2369	NA	NA
UHGV-1388857_14	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-1388857_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-1388857_15	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1388857_15	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1388857_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1388857_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1388857_16	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1388857_16	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-1388857_16	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-1388857_16	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-1388857_18	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1388857_18	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1388857_18	UniRef90	UniRef90_UPI0012DE0D94	site-specific DNA-methyltransferase	NA
UHGV-1388857_18	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-1388857_18	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1388857_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1388857_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1388857_18	COG	COG0863	DNA modification methylase	NA
UHGV-1388857_18	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1388857_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1388857_19	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-1388857_19	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-1388857_19	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1388857_21	PHROG	phrog_4392	NA	unknown function
UHGV-1388857_24	PHROG	phrog_22543	NA	unknown function
UHGV-1388857_24	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-1388857_26	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1388857_26	UniRef90	UniRef90_A0A2Z4QA35	Putative radical SAM domain protein	NA
UHGV-1388857_26	eggNOG-mapper	97138.C820_02863	NA	NA
UHGV-1388857_26	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1388857_26	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-1388857_28	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1388857_28	UniRef90	UniRef90_UPI000FF8D02D	AP2 domain-containing protein	NA
UHGV-1388857_28	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-1388857_28	Structural annotation	PF17375	NA	NA
UHGV-1388857_29	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1388857_29	UniRef90	UniRef90_A0A7W1N8Z0	Holliday junction endonuclease	NA
UHGV-1388857_29	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-1388857_29	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-1388857_29	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-1388857_30	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1388857_30	UniRef90	UniRef90_UPI001A9BD7A0	DNA cytosine methyltransferase	NA
UHGV-1388857_30	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1388857_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1388857_30	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1388857_31	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-1388857_31	PHROG	phrog_4433	NA	unknown function
UHGV-1388857_31	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-1388857_31	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1388857_31	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1388857_31	Structural annotation	NF007410	NA	NA
UHGV-1388857_32	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-1388857_32	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-1388857_32	eggNOG-mapper	1511.CLOST_1549	NA	NA
UHGV-1388857_32	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1388857_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1388857_32	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-1388857_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1388857_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1388857_33	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-1388857_33	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-1388857_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1388857_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1388857_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1388857_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1388857_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1388857_34	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1388857_34	UniRef90	UniRef90_UPI000933A555	HNH endonuclease	NA
UHGV-1388857_34	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-1388857_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1388857_35	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1388857_35	UniRef90	UniRef90_A0A2T3EXE0	HNHc domain-containing protein	NA
UHGV-1388857_35	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-1388857_35	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1388857_35	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1388857_35	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1388857_35	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1388857_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1388857_36	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-1388857_36	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-1388857_36	Structural annotation	PF05772	NA	NA
UHGV-1388857_37	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1388857_37	UniRef90	UniRef90_UPI0018AC33A4	ERF family protein	NA
UHGV-1388857_37	eggNOG-mapper	1497679.EP56_08440	ERF superfamily	NA
UHGV-1388857_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-1388857_37	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1388857_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1388857_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1388857_49	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-1388857_49	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-1388857_49	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1388857_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1388857_51	UniRef90	UniRef90_A0A841Z1U4	NA	NA
UHGV-1388857_51	eggNOG-mapper	655812.HMPREF0061_0218	NA	NA
UHGV-1388857_51	Pfam	PF16729	NA	DUF5067
UHGV-1388857_51	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-1388857_53	eggNOG-mapper	428127.EUBDOL_00130	sequence-specific DNA binding	NA
UHGV-1388857_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA