UHGV-1389032

Genome information

Genome length 30,210 bps

CDS count 45

Completeness 82.70% (medium-quality)

geNomad score 0.9682

Prediction confidence Confident

Genome information
Genome ID	UHGV-1389032
vOTU ID	vOTU-034141
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0212597
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9682
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.19
Jumbo phage	No

Genome content
Genome length	30,210 bps
GC content	54.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.18%
Average CDS length	619.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1389032_2	PHROG	phrog_19280	NA	unknown function
UHGV-1389032_2	UniRef90	UniRef90_UPI0018A03F6D	NA	NA
UHGV-1389032_2	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-1389032_2	Pfam	PF19789	NA	DUF6273
UHGV-1389032_2	Structural annotation	PF19789	NA	NA
UHGV-1389032_3	PHROG	phrog_19280	NA	unknown function
UHGV-1389032_3	UniRef90	UniRef90_UPI0018A03F6D	NA	NA
UHGV-1389032_3	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-1389032_3	Pfam	PF19789	NA	DUF6273
UHGV-1389032_5	PHROG	phrog_538	minor tail protein	tail
UHGV-1389032_5	UniRef90	UniRef90_UPI0006808273	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1389032_5	eggNOG-mapper	235909.GK0542	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1389032_5	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1389032_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1389032_6	UniRef90	UniRef90_A0A3M8DQB0	Phage tail family protein	NA
UHGV-1389032_6	eggNOG-mapper	634956.Geoth_0799	Phage tail protein	NA
UHGV-1389032_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1389032_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-1389032_6	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1389032_8	eggNOG-mapper	1211817.CCAT010000079_gene1378	nuclear chromosome segregation	NA
UHGV-1389032_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1389032_10	PHROG	phrog_88	major tail protein	tail
UHGV-1389032_10	UniRef90	UniRef90_A0A498CR56	Phage tail protein	NA
UHGV-1389032_10	eggNOG-mapper	562743.JH976434_gene1009	phage major tail protein, phi13 family	NA
UHGV-1389032_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1389032_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1389032_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1389032_11	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-1389032_11	Structural annotation	TIGR01725	NA	NA
UHGV-1389032_12	Structural annotation	PF05657	NA	NA
UHGV-1389032_13	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1389032_13	UniRef90	UniRef90_UPI001C3E9767	phage head closure protein	NA
UHGV-1389032_13	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-1389032_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1389032_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1389032_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1389032_14	PHROG	phrog_5223	neck protein	connector
UHGV-1389032_14	UniRef90	UniRef90_UPI000F062078	head-tail connector protein	NA
UHGV-1389032_14	eggNOG-mapper	411470.RUMGNA_02067	NA	NA
UHGV-1389032_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1389032_14	Structural annotation	TIGR01560	NA	NA
UHGV-1389032_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-1389032_15	UniRef90	UniRef90_UPI0018AB99F6	phage major capsid protein	NA
UHGV-1389032_15	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1389032_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1389032_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1389032_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1389032_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1389032_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1389032_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1389032_16	UniRef90	UniRef90_U4R420	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1389032_16	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-1389032_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1389032_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1389032_16	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-1389032_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-1389032_17	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-1389032_17	eggNOG-mapper	1203606.HMPREF1526_00980	Portal protein	NA
UHGV-1389032_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1389032_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1389032_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1389032_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1389032_18	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-1389032_18	eggNOG-mapper	1211814.CAPG01000074_gene3457	Terminase	NA
UHGV-1389032_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1389032_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1389032_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1389032_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1389032_19	PHROG	phrog_1066	NA	unknown function
UHGV-1389032_19	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-1389032_19	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1389032_20	UniRef90	UniRef90_UPI001C037859	HNH endonuclease	NA
UHGV-1389032_20	eggNOG-mapper	1243664.CAVL020000054_gene3029	HNH endonuclease	NA
UHGV-1389032_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1389032_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1389032_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1389032_21	UniRef90	UniRef90_UPI0007741D7F	NA	NA
UHGV-1389032_21	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-1389032_21	Pfam	PF07374	NA	DUF1492
UHGV-1389032_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1389032_21	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1389032_26	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1389032_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1389032_26	UniRef90	UniRef90_UPI0006C55CEC	helix-turn-helix transcriptional regulator	NA
UHGV-1389032_26	eggNOG-mapper	431943.CKL_3317	transcriptional regulator	NA
UHGV-1389032_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1389032_26	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-1389032_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1389032_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1389032_28	UniRef90	UniRef90_A0A316MQN7	HTH cro/C1-type domain-containing protein	NA
UHGV-1389032_28	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1389032_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1389032_28	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-1389032_29	UniRef90	UniRef90_UPI000E519457	heavy metal-binding domain-containing protein	NA
UHGV-1389032_29	eggNOG-mapper	1169144.KB910948_gene3638	Putative heavy-metal-binding	NA
UHGV-1389032_29	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-1389032_29	COG	COG0393	NA	NA
UHGV-1389032_29	Structural annotation	PF01906, MF_00338, NF002776, COG0393	NA	NA
UHGV-1389032_30	PHROG	phrog_29609	NA	unknown function
UHGV-1389032_30	UniRef90	UniRef90_A0A3A9DAK2	Transposase	NA
UHGV-1389032_30	eggNOG-mapper	679201.HMPREF9334_01614	NA	NA
UHGV-1389032_30	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-1389032_30	Structural annotation	PF18812, COG2929	NA	NA
UHGV-1389032_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1389032_31	UniRef90	UniRef90_A0A3A8W4L6	XRE family transcriptional regulator	NA
UHGV-1389032_31	eggNOG-mapper	1226322.HMPREF1545_02466	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1389032_31	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1389032_33	Structural annotation	PF13601, NF008565, COG1846	NA	NA
UHGV-1389032_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1389032_34	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1389032_34	eggNOG-mapper	1384065.JAGS01000001_gene1685	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1389032_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1389032_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1389032_39	PHROG	phrog_674	NA	unknown function
UHGV-1389032_39	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-1389032_39	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-1389032_39	Pfam	PF07083	NA	DUF1351
UHGV-1389032_39	Structural annotation	PF07083	NA	NA
UHGV-1389032_40	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1389032_40	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1389032_40	UniRef90	UniRef90_R6PFW1	Recombinase phage RecT family	NA
UHGV-1389032_40	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-1389032_40	Pfam	PF03837	RecT family	RecT
UHGV-1389032_40	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1389032_40	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1389032_40	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1389032_41	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1389032_41	UniRef90	UniRef90_A0A7X8XIL0	MBL fold metallo-hydrolase	NA
UHGV-1389032_41	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1389032_41	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1389032_41	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1389032_41	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1389032_42	PHROG	phrog_398	NA	unknown function
UHGV-1389032_42	UniRef90	UniRef90_UPI001E4CD732	putative HNHc nuclease	NA
UHGV-1389032_42	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-1389032_42	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1389032_42	Structural annotation	PF16784	NA	NA
UHGV-1389032_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1389032_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1389032_43	UniRef90	UniRef90_A0A1Y3SFQ6	Single-stranded DNA-binding protein	NA
UHGV-1389032_43	eggNOG-mapper	445972.ANACOL_00151	Single-stranded DNA-binding protein	NA
UHGV-1389032_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1389032_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1389032_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1389032_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1389032_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1389032_44	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1389032_44	UniRef90	UniRef90_B0PEW0	NA	NA
UHGV-1389032_44	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-1389032_44	Pfam	PF19808	NA	DUF6291
UHGV-1389032_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1389032_44	Structural annotation	PF19808	NA	NA