UHGV-1389232

Genome information

Genome length 30,408 bps

CDS count 52

Completeness 83.37% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-1389232
vOTU ID	vOTU-024306
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0213631
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.65
Jumbo phage	No

Genome content
Genome length	30,408 bps
GC content	45.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.04%
Average CDS length	541.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1389232_1	Structural annotation	PF12510	NA	NA
UHGV-1389232_2	PHROG	phrog_20016	NA	unknown function
UHGV-1389232_2	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-1389232_2	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-1389232_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1389232_3	PHROG	phrog_16490	NA	unknown function
UHGV-1389232_3	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-1389232_3	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-1389232_4	PHROG	phrog_22984	NA	unknown function
UHGV-1389232_5	PHROG	phrog_21718	NA	unknown function
UHGV-1389232_5	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1389232_6	PHROG	phrog_3754	NA	unknown function
UHGV-1389232_6	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1389232_7	eggNOG-mapper	158787.BSCA_1576	Helix-turn-helix XRE-family like proteins	NA
UHGV-1389232_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1389232_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1389232_12	PHROG	phrog_1863	NA	unknown function
UHGV-1389232_12	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-1389232_12	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-1389232_13	eggNOG-mapper	642492.Clole_0840	NA	NA
UHGV-1389232_14	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1389232_14	PHROG	phrog_9611	endolysin	lysis
UHGV-1389232_14	UniRef90	UniRef90_A0A374VU40	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1389232_14	eggNOG-mapper	411473.RUMCAL_00096	Ami_2	NA
UHGV-1389232_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1389232_14	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1389232_14	Structural annotation	PF01510, PF19087, MF_04111, NF008758, NF041850, COG5632	NA	NA
UHGV-1389232_15	PHROG	phrog_20274	NA	unknown function
UHGV-1389232_15	UniRef90	UniRef90_A0A174NPD4	Membrane protein	NA
UHGV-1389232_15	eggNOG-mapper	1298920.KI911353_gene4880	NA	NA
UHGV-1389232_15	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-1389232_15	COG	COG4905	NA	NA
UHGV-1389232_15	Structural annotation	PF06541, COG4905	NA	NA
UHGV-1389232_16	UniRef90	UniRef90_A0A1Y4RWY1	NA	NA
UHGV-1389232_16	eggNOG-mapper	693746.OBV_22700	NA	NA
UHGV-1389232_16	Structural annotation	PF14301	NA	NA
UHGV-1389232_18	PHROG	phrog_1220	head protein	head and packaging
UHGV-1389232_18	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-1389232_18	Structural annotation	PF20747	NA	NA
UHGV-1389232_19	PHROG	phrog_538	minor tail protein	tail
UHGV-1389232_19	eggNOG-mapper	1410670.JHXF01000015_gene2304	NA	NA
UHGV-1389232_19	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1389232_19	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1389232_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1389232_20	UniRef90	UniRef90_D9SQ05	Tail component family protein	NA
UHGV-1389232_20	eggNOG-mapper	573061.Clocel_2428	Phage tail protein	NA
UHGV-1389232_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-1389232_20	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1389232_21	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-1389232_21	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1389232_21	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1389232_23	PHROG	phrog_885	major tail protein	tail
UHGV-1389232_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1389232_23	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1389232_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1389232_24	Structural annotation	PF11367	NA	NA
UHGV-1389232_25	PHROG	phrog_17977	NA	unknown function
UHGV-1389232_25	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1389232_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1389232_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1389232_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-1389232_27	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-1389232_27	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-1389232_27	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1389232_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1389232_28	Structural annotation	PF06810	NA	NA
UHGV-1389232_29	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1389232_29	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-1389232_29	eggNOG-mapper	673376.F2VHW3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1389232_30	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-1389232_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1389232_31	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1389232_31	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-1389232_31	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1389232_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1389232_31	COG	COG2369	NA	NA
UHGV-1389232_31	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1389232_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-1389232_32	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1389232_32	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1389232_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1389232_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1389232_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1389232_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1389232_33	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-1389232_33	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1389232_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1389232_33	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1389232_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1389232_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-1389232_33	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1389232_34	PHROG	phrog_2412	NA	unknown function
UHGV-1389232_36	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1389232_36	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1389232_36	UniRef90	UniRef90_A0A843GYV9	Type II methyltransferase	NA
UHGV-1389232_36	eggNOG-mapper	1137799.GZ78_11010	DNA methylase	NA
UHGV-1389232_36	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1389232_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1389232_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1389232_36	COG	COG0863	DNA modification methylase	NA
UHGV-1389232_36	Structural annotation	PF01555, PF02195, NF010253, TIGR00180, COG0863, COG5119	NA	NA
UHGV-1389232_38	PHROG	phrog_8680	NA	unknown function
UHGV-1389232_38	UniRef90	UniRef90_A0A373V619	NA	NA
UHGV-1389232_38	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1389232_38	Pfam	PF14386	NA	DUF4417
UHGV-1389232_38	Structural annotation	PF14386	NA	NA
UHGV-1389232_41	PHROG	phrog_22543	NA	unknown function
UHGV-1389232_41	eggNOG-mapper	246199.CUS_4371	NA	NA
UHGV-1389232_42	eggNOG-mapper	610130.Closa_0421	NA	NA
UHGV-1389232_42	Structural annotation	PF18350, NF002745, COG2139	NA	NA
UHGV-1389232_43	PHROG	phrog_8684	NA	unknown function
UHGV-1389232_43	UniRef90	UniRef90_A0A1X2FUX0	YopX domain-containing protein	NA
UHGV-1389232_43	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-1389232_43	Pfam	PF09643	YopX protein	YopX
UHGV-1389232_43	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1389232_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1389232_44	PHROG	phrog_3136	NA	unknown function
UHGV-1389232_44	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1389232_44	eggNOG-mapper	1007096.BAGW01000031_gene120	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1389232_44	Pfam	PF04266	ASCH domain	ASCH
UHGV-1389232_44	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1389232_44	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1389232_49	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1389232_49	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-1389232_49	eggNOG-mapper	1232453.BAIF02000057_gene1144	NA	NA
UHGV-1389232_49	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1389232_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1389232_49	Structural annotation	PF14297	NA	NA
UHGV-1389232_50	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1389232_50	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1389232_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1389232_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1389232_51	UniRef90	UniRef90_A0A1C6GFU4	Single-stranded DNA-binding protein	NA
UHGV-1389232_51	eggNOG-mapper	1514668.JOOA01000002_gene3349	Single-stranded DNA-binding protein	NA
UHGV-1389232_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1389232_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1389232_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1389232_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1389232_51	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA