UHGV-1389237

Genome information

Genome length 42,215 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-1389237
vOTU ID	vOTU-058277
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0280194
BioSample	SAMEA2738122
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.89
Jumbo phage	No

Genome content
Genome length	42,215 bps
GC content	56.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	90.14%
Average CDS length	673.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1389237_11	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-1389237_11	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1389237_11	UniRef90	UniRef90_A0A2I1VR90	PD-(D/E)XK nuclease family protein	NA
UHGV-1389237_11	eggNOG-mapper	1327776.R4JFZ7_9CAUD	PD-(D/E)XK nuclease superfamily	NA
UHGV-1389237_11	PADLOC	cas4	CRISPR-associated protein Cas4	CRISPR-CAS
UHGV-1389237_11	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1389237_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1389237_12	PHROG	phrog_243	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1389237_12	UniRef90	UniRef90_A0A6G9Y3R3	AAA family ATPase	NA
UHGV-1389237_12	eggNOG-mapper	1589274.A0A0B5A489_9CAUD	DNA helicase activity	NA
UHGV-1389237_12	Pfam	PF13481	AAA domain	AAA_25
UHGV-1389237_13	KOfam	K18960	gp49; recombination endonuclease VII	NA
UHGV-1389237_13	PHROG	phrog_307	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-1389237_13	UniRef90	UniRef90_W0LNQ6	Endonuclease VII	NA
UHGV-1389237_13	eggNOG-mapper	205870.Q857G3_BPMB2	Recombination endonuclease VII	NA
UHGV-1389237_13	Pfam	PF02945	Recombination endonuclease VII	Endonuclease_7
UHGV-1389237_15	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1389237_15	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1389237_15	UniRef90	UniRef90_A0A6B9L607	DNA primase	NA
UHGV-1389237_15	eggNOG-mapper	1195075.I6RA37_9CAUD	NA	NA
UHGV-1389237_15	PADLOC	drt-cluster192	DRT	DRT
UHGV-1389237_15	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1389237_15	Structural annotation	PF08275, PF13362, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-1389237_16	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-1389237_16	PHROG	phrog_22	thioredoxin domain	DNA, RNA and nucleotide metabolism
UHGV-1389237_16	UniRef90	UniRef90_UPI000F7878D2	glutaredoxin-like protein NrdH	NA
UHGV-1389237_16	eggNOG-mapper	1423734.JCM14202_3873	Glutaredoxin	NA
UHGV-1389237_16	Pfam	PF00462	Glutaredoxin	Glutaredoxin
UHGV-1389237_16	COG	COG0695	Glutaredoxin	NA
UHGV-1389237_16	Structural annotation	PF00462, MF_01132, NF007657, COG0695	NA	NA
UHGV-1389237_20	PHROG	phrog_236	nucleotide kinase	other
UHGV-1389237_20	eggNOG-mapper	1287276.X752_25920	NA	NA
UHGV-1389237_20	Pfam	PF11753	NA	DUF3310
UHGV-1389237_25	PHROG	phrog_221	metallo-phosphoesterase	other
UHGV-1389237_25	UniRef90	UniRef90_A0A2I1VR67	Metallophos_2 domain-containing protein	NA
UHGV-1389237_25	eggNOG-mapper	1109716.G9FHN0_9CAUD	hydrolase activity	NA
UHGV-1389237_25	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1389237_25	Structural annotation	MF_00325, NF041753, COG1311	NA	NA
UHGV-1389237_26	PHROG	phrog_354	sigma-K factor	transcription regulation
UHGV-1389237_26	UniRef90	UniRef90_A0A5P8D7X5	Helix-turn-helix DNA binding domain protein	NA
UHGV-1389237_26	eggNOG-mapper	1109715.G9FHT5_9CAUD	NA	NA
UHGV-1389237_27	PHROG	phrog_364	ribonucleoside reductase class II	DNA, RNA and nucleotide metabolism
UHGV-1389237_27	UniRef90	UniRef90_A0A2Z5XVH3	Hypotheical protein	NA
UHGV-1389237_27	eggNOG-mapper	208439.AJAP_27910	NA	NA
UHGV-1389237_29	PHROG	phrog_517	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1389237_29	UniRef90	UniRef90_R4JHQ8	HTH_38 domain-containing protein	NA
UHGV-1389237_29	eggNOG-mapper	1122247.C731_2950	Helix-turn-helix domain	NA
UHGV-1389237_30	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-1389237_30	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1389237_30	UniRef90	UniRef90_A0A2I1VR42	DNA polymerase I	NA
UHGV-1389237_30	eggNOG-mapper	1122247.C731_2948	DNA polymerase family A	NA
UHGV-1389237_30	PADLOC	drt-cluster58	DRT	DRT
UHGV-1389237_30	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-1389237_30	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1389237_30	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1389237_30	Structural annotation	PF00476, PF01612, MF_04101, NF011541, COG0749	NA	NA
UHGV-1389237_33	PHROG	phrog_352	minor tail protein	tail
UHGV-1389237_33	UniRef90	UniRef90_UPI001CCDE3D8	NA	NA
UHGV-1389237_33	eggNOG-mapper	1195075.I6RA20_9CAUD	NA	NA
UHGV-1389237_33	Pfam	PF10910	NA	DUF2744
UHGV-1389237_34	PHROG	phrog_110	minor tail protein	tail
UHGV-1389237_34	UniRef90	UniRef90_UPI001CCCE083	phage tail protein	NA
UHGV-1389237_34	eggNOG-mapper	1109715.G9FHR5_9CAUD	NA	NA
UHGV-1389237_34	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1389237_35	PHROG	phrog_106	minor tail protein	tail
UHGV-1389237_35	UniRef90	UniRef90_UPI001CCD3BEA	phage tail family protein	NA
UHGV-1389237_35	eggNOG-mapper	1109716.G9FHK7_9CAUD	NA	NA
UHGV-1389237_36	KOfam	K01421	yhgE; putative membrane protein	NA
UHGV-1389237_36	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1389237_36	eggNOG-mapper	1327770.R4JG89_9CAUD	NA	NA
UHGV-1389237_37	PHROG	phrog_393	tail assembly chaperone	tail
UHGV-1389237_37	eggNOG-mapper	208439.AJAP_28145	NA	NA
UHGV-1389237_38	PHROG	phrog_330	tail assembly chaperone	tail
UHGV-1389237_38	UniRef90	UniRef90_UPI001178A53E	phage tail assembly protein	NA
UHGV-1389237_38	eggNOG-mapper	1109715.G9FHR2_9CAUD	Pfam:GP24_25	NA
UHGV-1389237_38	Pfam	PF17388	Mycobacteriophage tail assembly protein	GP24_25
UHGV-1389237_39	PHROG	phrog_117	major tail protein	tail
UHGV-1389237_39	UniRef90	UniRef90_UPI001CCDFA9D	phage tail protein	NA
UHGV-1389237_39	eggNOG-mapper	1109715.G9FHR1_9CAUD	NA	NA
UHGV-1389237_40	PHROG	phrog_123	tail terminator	connector
UHGV-1389237_40	UniRef90	UniRef90_A0A222ZI51	Tail terminator	NA
UHGV-1389237_40	eggNOG-mapper	1109715.G9FHR0_9CAUD	NA	NA
UHGV-1389237_42	PHROG	phrog_320	head closure Hc1	connector
UHGV-1389237_42	UniRef90	UniRef90_A0A097BXL1	Head-to-tail stopper	NA
UHGV-1389237_42	eggNOG-mapper	208439.AJAP_28120	NA	NA
UHGV-1389237_43	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1389237_43	UniRef90	UniRef90_A0A6G6XS05	Head-to-tail adaptor	NA
UHGV-1389237_43	eggNOG-mapper	1109716.G9FHK0_9CAUD	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1389237_43	Pfam	PF09355	NA	Phage_Gp19
UHGV-1389237_43	Structural annotation	PF09355	NA	NA
UHGV-1389237_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-1389237_44	UniRef90	UniRef90_UPI001CCB89C1	phage major capsid protein	NA
UHGV-1389237_44	eggNOG-mapper	414996.IL38_07025	Phage capsid family	NA
UHGV-1389237_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1389237_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1389237_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1389237_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1389237_45	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-1389237_45	UniRef90	UniRef90_A0A4Q3PCA4	Head assembly protein	NA
UHGV-1389237_45	eggNOG-mapper	1120934.KB894445_gene3656	NA	NA
UHGV-1389237_46	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1389237_46	UniRef90	UniRef90_A0A0B5A0U5	Capsid maturation protease	NA
UHGV-1389237_46	eggNOG-mapper	1109716.G9FHJ6_9CAUD	peptidase activity	NA
UHGV-1389237_47	PHROG	phrog_104	portal protein	head and packaging
UHGV-1389237_47	UniRef90	UniRef90_UPI001CCB988A	phage portal protein	NA
UHGV-1389237_47	eggNOG-mapper	1109715.G9FHW8_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1389237_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1389237_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1389237_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1389237_48	UniRef90	UniRef90_A0A6G6XSQ2	Terminase large subunit	NA
UHGV-1389237_48	eggNOG-mapper	1109715.G9FHW7_9CAUD	Phage Terminase	NA
UHGV-1389237_48	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1389237_48	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1389237_49	PHROG	phrog_726	NA	unknown function
UHGV-1389237_49	eggNOG-mapper	1121353.H924_07100	NA	NA
UHGV-1389237_50	PHROG	phrog_3428	holin	lysis
UHGV-1389237_51	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1389237_51	PHROG	phrog_700	endolysin	lysis
UHGV-1389237_51	UniRef90	UniRef90_A0A2I1VRI7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1389237_51	eggNOG-mapper	698964.CDPW8_0175	Negative regulator of beta-lactamase expression	NA
UHGV-1389237_51	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1389237_51	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1389237_52	eggNOG-mapper	266117.Rxyl_2672	cellulase activity	NA
UHGV-1389237_52	Pfam	PF12138	Spherulation-specific family 4	Spherulin4
UHGV-1389237_52	COG	COG1122	Energy-coupling factor transporter ATP-binding protein EcfA2	NA
UHGV-1389237_53	PHROG	phrog_226	minor tail protein	tail
UHGV-1389237_53	UniRef90	UniRef90_A0A6G6XT43	Terminase small subunit	NA
UHGV-1389237_53	eggNOG-mapper	1051140.G1EV55_9CAUD	NA	NA
UHGV-1389237_54	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1389237_54	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1389237_54	UniRef90	UniRef90_UPI0008FB4227	HNH endonuclease	NA
UHGV-1389237_54	eggNOG-mapper	1429759.W0LJ29_9CAUD	NA	NA
UHGV-1389237_54	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1389237_57	eggNOG-mapper	101510.RHA1_ro11299	NA	NA