UHGV-1389243

Genome information

Genome length 30,430 bps

CDS count 33

Completeness 79.00% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1389243
vOTU ID	vOTU-034146
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0213753
BioSample	SAMN06112081
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.15
Jumbo phage	No

Genome content
Genome length	30,430 bps
GC content	43.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	94.99%
Average CDS length	878.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1389243_1	UniRef90	UniRef90_UPI0005DA6E11	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA
UHGV-1389243_1	eggNOG-mapper	1123309.AQYB01000022_gene10	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1389243_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1389243_3	PHROG	phrog_4964	NA	unknown function
UHGV-1389243_3	UniRef90	UniRef90_A0A1F2H8S5	Elongation factor G	NA
UHGV-1389243_4	PHROG	phrog_8487	NA	unknown function
UHGV-1389243_4	UniRef90	UniRef90_O48383	Orf111	NA
UHGV-1389243_4	eggNOG-mapper	646413.C5IUL2_9CAUD	Streptococcus thermophilus bacteriophage Gp111 protein	NA
UHGV-1389243_4	Pfam	PF07410	Streptococcus thermophilus bacteriophage Gp111 protein	Phage_Gp111
UHGV-1389243_4	Structural annotation	PF07410	NA	NA
UHGV-1389243_5	PHROG	phrog_1309	endolysin	lysis
UHGV-1389243_5	UniRef90	UniRef90_A0A2H4IZY5	Peptidase C51 domain-containing protein	NA
UHGV-1389243_5	eggNOG-mapper	1051631.F8HGP2_9CAUD	peptidoglycan catabolic process	NA
UHGV-1389243_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-1389243_5	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-1389243_5	Structural annotation	PF05257, TIGR02219, COG3942	NA	NA
UHGV-1389243_6	UniRef90	UniRef90_A0A7H2BGB2	Spherulation-specific family 4 protein	NA
UHGV-1389243_6	eggNOG-mapper	1122173.AXVL01000001_gene1691	cell adhesion	NA
UHGV-1389243_6	Pfam	PF12138	Spherulation-specific family 4	Spherulin4
UHGV-1389243_6	COG	COG1122	Energy-coupling factor transporter ATP-binding protein EcfA2	NA
UHGV-1389243_7	PHROG	phrog_4757	NA	unknown function
UHGV-1389243_7	UniRef90	UniRef90_A0A150NVR4	NA	NA
UHGV-1389243_8	PHROG	phrog_6487	NA	unknown function
UHGV-1389243_8	UniRef90	UniRef90_A0A3S4LRZ3	NA	NA
UHGV-1389243_8	eggNOG-mapper	365659.smi_0474	NA	NA
UHGV-1389243_8	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1389243_8	Structural annotation	PF10651, NF041178, COG5456	NA	NA
UHGV-1389243_9	PHROG	phrog_33625	holin	lysis
UHGV-1389243_9	UniRef90	UniRef90_T0UKS3	Phage holin	NA
UHGV-1389243_9	eggNOG-mapper	1297534.CAUJ01000005_gene166	Holin, phage phi LC3 family	NA
UHGV-1389243_9	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1389243_9	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1389243_9	COG	COG5546	NA	NA
UHGV-1389243_9	Structural annotation	COG5546	NA	NA
UHGV-1389243_10	PHROG	phrog_4257	NA	unknown function
UHGV-1389243_10	UniRef90	UniRef90_A0A1L2JYP2	Transcription termination factor	NA
UHGV-1389243_10	eggNOG-mapper	997830.HMPREF1124_0612	NA	NA
UHGV-1389243_11	PHROG	phrog_1567	NA	unknown function
UHGV-1389243_11	UniRef90	UniRef90_A0A139RNG9	NA	NA
UHGV-1389243_12	PHROG	phrog_1060	NA	unknown function
UHGV-1389243_12	UniRef90	UniRef90_UPI00189C3811	NA	NA
UHGV-1389243_12	Pfam	PF07104	NA	DUF1366
UHGV-1389243_12	Structural annotation	PF07104	NA	NA
UHGV-1389243_13	PHROG	phrog_372	tail protein	tail
UHGV-1389243_13	UniRef90	UniRef90_UPI001898E57A	NA	NA
UHGV-1389243_13	eggNOG-mapper	682370.C9W9J1_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1389243_13	Pfam	PF05895	NA	DUF859
UHGV-1389243_13	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1389243_14	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1389243_14	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-1389243_14	UniRef90	UniRef90_A0A2H4IZZ5	Peptidase C51 domain-containing protein	NA
UHGV-1389243_14	eggNOG-mapper	682370.C9W9J0_9CAUD	peptidoglycan catabolic process	NA
UHGV-1389243_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1389243_14	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1389243_14	Pfam	PF05257	CHAP domain	CHAP
UHGV-1389243_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1389243_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1389243_14	Structural annotation	PF14594, PF00629, TIGR01665, NF033675, COG4926	NA	NA
UHGV-1389243_15	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1389243_15	UniRef90	UniRef90_O80180	Putative minor structural protein	NA
UHGV-1389243_15	eggNOG-mapper	78541.O80180_9CAUD	Phage tail protein	NA
UHGV-1389243_15	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1389243_15	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1389243_15	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-1389243_16	PHROG	phrog_1204	tail protein	tail
UHGV-1389243_16	UniRef90	UniRef90_A0A2H4J016	TMP_3 domain-containing protein	NA
UHGV-1389243_16	eggNOG-mapper	85154.O34071_BPO12	peptidoglycan catabolic process	NA
UHGV-1389243_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1389243_16	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1389243_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1389243_17	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-1389243_17	UniRef90	UniRef90_O34070	ORF39	NA
UHGV-1389243_18	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1389243_18	UniRef90	UniRef90_UPI0015D30B22	tail assembly chaperone	NA
UHGV-1389243_18	eggNOG-mapper	682370.C9W9I6_9CAUD	Pfam:Phage_TAC_12	NA
UHGV-1389243_18	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1389243_18	Structural annotation	PF12363	NA	NA
UHGV-1389243_19	PHROG	phrog_238	major tail protein	tail
UHGV-1389243_19	UniRef90	UniRef90_A0A2X3UI79	Phage tail protein	NA
UHGV-1389243_19	eggNOG-mapper	1385385.U6E9D4_9CAUD	Phage major tail protein 2	NA
UHGV-1389243_19	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1389243_19	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1389243_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1389243_20	PHROG	phrog_176	tail terminator	connector
UHGV-1389243_20	UniRef90	UniRef90_A0A2X3U795	NA	NA
UHGV-1389243_20	eggNOG-mapper	682370.C9W9I4_9CAUD	NA	NA
UHGV-1389243_20	Structural annotation	PF11367	NA	NA
UHGV-1389243_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1389243_21	UniRef90	UniRef90_UPI0015D3C8F3	HK97 gp10 family phage protein	NA
UHGV-1389243_21	eggNOG-mapper	682370.C9W9I3_9CAUD	exonuclease activity	NA
UHGV-1389243_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1389243_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1389243_21	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1389243_22	PHROG	phrog_348	minor head protein	head and packaging
UHGV-1389243_22	UniRef90	UniRef90_O34065	ORF34	NA
UHGV-1389243_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1389243_23	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1389243_23	UniRef90	UniRef90_O34064	ORF33	NA
UHGV-1389243_23	eggNOG-mapper	1123302.KB904182_gene68	Phage gp6-like head-tail connector protein	NA
UHGV-1389243_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1389243_23	Structural annotation	PF05135	NA	NA
UHGV-1389243_24	PHROG	phrog_5279	NA	unknown function
UHGV-1389243_24	UniRef90	UniRef90_O34063	ORF32	NA
UHGV-1389243_25	PHROG	phrog_29	major head protein	head and packaging
UHGV-1389243_25	UniRef90	UniRef90_O34062	ORF31	NA
UHGV-1389243_25	eggNOG-mapper	85154.O34062_BPO12	Phage major capsid protein E	NA
UHGV-1389243_25	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1389243_25	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1389243_26	PHROG	phrog_909	major head protein	head and packaging
UHGV-1389243_26	UniRef90	UniRef90_A0A2X3UEG8	Phage structural protein	NA
UHGV-1389243_26	Structural annotation	PF02924	NA	NA
UHGV-1389243_27	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1389243_27	UniRef90	UniRef90_O34060	ORF29	NA
UHGV-1389243_27	eggNOG-mapper	1123315.AUIP01000003_gene242	NA	NA
UHGV-1389243_27	Pfam	PF14265	NA	DUF4355
UHGV-1389243_27	Structural annotation	PF14265	NA	NA
UHGV-1389243_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1389243_28	UniRef90	UniRef90_A0A2H4J030	Phage_Mu_F domain-containing protein	NA
UHGV-1389243_28	eggNOG-mapper	1385385.U6E9F1_9CAUD	Phage Mu protein F like protein	NA
UHGV-1389243_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1389243_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1389243_28	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-1389243_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-1389243_29	UniRef90	UniRef90_C9W9H5	Portal protein	NA
UHGV-1389243_29	eggNOG-mapper	682370.C9W9H5_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1389243_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1389243_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1389243_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1389243_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1389243_30	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1389243_30	UniRef90	UniRef90_U6E9B3	Terminase_6C domain-containing protein	NA
UHGV-1389243_30	eggNOG-mapper	85154.O34057_BPO12	Terminase-like family	NA
UHGV-1389243_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1389243_30	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1389243_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1389243_30	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1389243_31	PHROG	phrog_2412	NA	unknown function
UHGV-1389243_31	UniRef90	UniRef90_UPI000C7D5747	stress-induced protein	NA
UHGV-1389243_31	eggNOG-mapper	12402.Q708N5_9CAUD	NA	NA
UHGV-1389243_32	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1389243_32	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1389243_32	UniRef90	UniRef90_UPI00066C18F5	DNA modification methylase	NA
UHGV-1389243_32	eggNOG-mapper	12402.Q708N6_9CAUD	N-methyltransferase activity	NA
UHGV-1389243_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1389243_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1389243_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1389243_32	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1389243_33	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1389243_33	UniRef90	UniRef90_A0A191KC45	ArpU late transcriptional regulator	NA
UHGV-1389243_33	eggNOG-mapper	1403946.Q615_SPAC00127G0144	Transcriptional regulator, ArpU family	NA
UHGV-1389243_33	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1389243_33	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA