UHGV-1389388

Genome information

Genome length 42,245 bps

CDS count 54

Completeness 90.70% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-1389388
vOTU ID	vOTU-063681
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0280065
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.70% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.58
Jumbo phage	No

Genome content
Genome length	42,245 bps
GC content	45.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.55%
Average CDS length	719.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1389388_1	KOfam	K14059	int; integrase	NA
UHGV-1389388_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1389388_1	UniRef90	UniRef90_R6X1Y3	Tyr recombinase domain-containing protein	NA
UHGV-1389388_1	eggNOG-mapper	1123250.KB908381_gene1631	Belongs to the 'phage' integrase family	NA
UHGV-1389388_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1389388_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1389388_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1389388_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1389388_3	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-1389388_3	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-1389388_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1389388_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1389388_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1389388_7	PHROG	phrog_6058	NA	unknown function
UHGV-1389388_7	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-1389388_7	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-1389388_7	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1389388_8	Structural annotation	NF041909	NA	NA
UHGV-1389388_9	PHROG	phrog_14367	NA	unknown function
UHGV-1389388_9	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-1389388_9	eggNOG-mapper	626939.HMPREF9443_00995	LysM domain protein	NA
UHGV-1389388_9	Pfam	PF01476	LysM domain	LysM
UHGV-1389388_9	COG	COG1388	LysM repeat	NA
UHGV-1389388_9	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-1389388_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1389388_10	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-1389388_10	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-1389388_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1389388_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1389388_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1389388_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1389388_11	UniRef90	UniRef90_R6WLK2	Conserved domain protein	NA
UHGV-1389388_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1389388_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1389388_11	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1389388_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1389388_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1389388_12	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-1389388_12	eggNOG-mapper	525257.HMPREF0204_11404	RecT family	NA
UHGV-1389388_12	Pfam	PF03837	RecT family	RecT
UHGV-1389388_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1389388_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1389388_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1389388_14	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1389388_14	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-1389388_14	eggNOG-mapper	1211817.CCAT010000007_gene1058	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1389388_14	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1389388_14	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1389388_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1389388_14	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-1389388_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1389388_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1389388_17	UniRef90	UniRef90_A0A1Q6RAH0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1389388_17	eggNOG-mapper	203119.Cthe_1728	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1389388_17	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1389388_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1389388_17	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1389388_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1389388_17	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1389388_18	PHROG	phrog_12728	NA	unknown function
UHGV-1389388_18	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-1389388_20	PHROG	phrog_10714	NA	unknown function
UHGV-1389388_20	Structural annotation	PF21173	NA	NA
UHGV-1389388_21	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1389388_21	UniRef90	UniRef90_UPI001ADD9F33	SAM-dependent methyltransferase	NA
UHGV-1389388_21	eggNOG-mapper	457405.FSDG_01549	methyltransferase	NA
UHGV-1389388_21	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1389388_21	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1389388_21	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1389388_21	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1389388_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1389388_25	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1389388_25	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1389388_25	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-1389388_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1389388_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1389388_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1389388_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1389388_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1389388_26	UniRef90	UniRef90_A0A1Q6RQK6	Single-stranded DNA-binding protein	NA
UHGV-1389388_26	eggNOG-mapper	904314.SEVCU012_1220	Single-stranded DNA-binding protein	NA
UHGV-1389388_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1389388_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1389388_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1389388_26	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-1389388_31	PHROG	phrog_15863	NA	unknown function
UHGV-1389388_31	UniRef90	UniRef90_R6WLL6	Cytochrome c domain-containing protein	NA
UHGV-1389388_31	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-1389388_31	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-1389388_33	Structural annotation	PF13983	NA	NA
UHGV-1389388_34	UniRef90	UniRef90_UPI00103300F2	helix-turn-helix domain-containing protein	NA
UHGV-1389388_34	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-1389388_34	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-1389388_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1389388_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1389388_36	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-1389388_36	eggNOG-mapper	568816.Acin_1836	Terminase RNaseH-like domain	NA
UHGV-1389388_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1389388_36	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1389388_36	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1389388_38	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1389388_38	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-1389388_38	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-1389388_38	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1389388_38	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1389388_39	PHROG	phrog_528	NA	unknown function
UHGV-1389388_39	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-1389388_40	PHROG	phrog_458	protease	other
UHGV-1389388_40	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-1389388_41	PHROG	phrog_212	major head protein	head and packaging
UHGV-1389388_41	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-1389388_41	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-1389388_41	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1389388_41	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1389388_42	PHROG	phrog_427	NA	unknown function
UHGV-1389388_42	Structural annotation	PF21190	NA	NA
UHGV-1389388_43	PHROG	phrog_394	tail protein	tail
UHGV-1389388_43	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-1389388_43	eggNOG-mapper	1123288.SOV_1c10710	NA	NA
UHGV-1389388_43	Structural annotation	PF17212	NA	NA
UHGV-1389388_44	PHROG	phrog_376	tail protein	tail
UHGV-1389388_44	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-1389388_44	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-1389388_44	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1389388_45	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1389388_45	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-1389388_46	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1389388_46	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-1389388_46	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-1389388_47	PHROG	phrog_10475	endolysin	lysis
UHGV-1389388_47	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-1389388_47	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-1389388_47	Structural annotation	PF01464, COG0741	NA	NA
UHGV-1389388_48	PHROG	phrog_9880	NA	unknown function
UHGV-1389388_48	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-1389388_48	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-1389388_48	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1389388_49	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-1389388_49	PHROG	phrog_1640	tail protein	tail
UHGV-1389388_49	eggNOG-mapper	1123288.SOV_1c10770	Right handed beta helix region	NA
UHGV-1389388_49	COG	COG5434	Polygalacturonase	NA
UHGV-1389388_49	Structural annotation	PF03906	NA	NA
UHGV-1389388_51	PHROG	phrog_2837	tail protein	tail
UHGV-1389388_51	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-1389388_51	eggNOG-mapper	520709.F985_01945	NA	NA
UHGV-1389388_51	Pfam	PF14301	NA	DUF4376
UHGV-1389388_51	Structural annotation	PF14301	NA	NA
UHGV-1389388_52	PHROG	phrog_4105	NA	unknown function
UHGV-1389388_52	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-1389388_54	eggNOG-mapper	1123511.KB905868_gene158	NA	NA