UHGV-1389490

Genome information

Genome length 42,162 bps

CDS count 66

Completeness 92.69% (high-quality)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-1389490
vOTU ID	vOTU-062798
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0279644
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.95
Jumbo phage	No

Genome content
Genome length	42,162 bps
GC content	35.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	94.88%
Average CDS length	609.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1389490_1	KOfam	K09960	NA	NA
UHGV-1389490_1	PHROG	phrog_530	head maturation protease	head and packaging
UHGV-1389490_1	eggNOG-mapper	563192.HMPREF0179_00172	NA	NA
UHGV-1389490_1	Pfam	PF09979	NA	DUF2213
UHGV-1389490_1	COG	COG3566	NA	NA
UHGV-1389490_3	PHROG	phrog_264	major head protein	head and packaging
UHGV-1389490_3	UniRef90	UniRef90_A0A7C9G8W4	NA	NA
UHGV-1389490_3	eggNOG-mapper	563192.HMPREF0179_00174	NA	NA
UHGV-1389490_3	Pfam	PF09950	NA	DUF2184
UHGV-1389490_3	COG	COG4834	NA	NA
UHGV-1389490_3	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-1389490_5	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-1389490_5	Pfam	PF13262	NA	DUF4054
UHGV-1389490_5	Structural annotation	PF13262	NA	NA
UHGV-1389490_6	PHROG	phrog_222	tail protein	tail
UHGV-1389490_6	UniRef90	UniRef90_A0A6M3J933	Putative structural protein	NA
UHGV-1389490_6	eggNOG-mapper	742740.HMPREF9474_03151	NA	NA
UHGV-1389490_8	Structural annotation	PF05657	NA	NA
UHGV-1389490_9	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-1389490_9	UniRef90	UniRef90_A0A7C9K2A2	NA	NA
UHGV-1389490_9	eggNOG-mapper	742823.HMPREF9465_00935	NA	NA
UHGV-1389490_9	Pfam	PF11863	NA	DUF3383
UHGV-1389490_9	Structural annotation	PF11863, COG4386	NA	NA
UHGV-1389490_10	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-1389490_11	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-1389490_12	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-1389490_12	UniRef90	UniRef90_UPI001412FD5D	transglycosylase SLT domain-containing protein	NA
UHGV-1389490_12	eggNOG-mapper	220341.16502215	Belongs to the WXG100 family	NA
UHGV-1389490_12	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1389490_13	PHROG	phrog_817	tail fiber protein	tail
UHGV-1389490_13	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-1389490_15	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-1389490_15	UniRef90	UniRef90_A0A8F5PD49	43 kDa tail protein	NA
UHGV-1389490_15	eggNOG-mapper	1118235.CAJH01000039_gene2482	NA	NA
UHGV-1389490_15	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1389490_16	UniRef90	UniRef90_A0A353T661	Gp138_N domain-containing protein	NA
UHGV-1389490_16	eggNOG-mapper	1115515.EV102420_14_01220	Baseplate assembly protein	NA
UHGV-1389490_16	Pfam	PF18352	NA	Gp138_N
UHGV-1389490_16	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-1389490_16	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-1389490_17	PHROG	phrog_120	baseplate protein	tail
UHGV-1389490_17	UniRef90	UniRef90_A0A0H3FH61	Putative bacteriophage protein	NA
UHGV-1389490_17	eggNOG-mapper	741091.Rahaq_5012	NA	NA
UHGV-1389490_17	Structural annotation	TIGR03357, COG3628	NA	NA
UHGV-1389490_18	PHROG	phrog_6	baseplate protein	tail
UHGV-1389490_18	UniRef90	UniRef90_A0A353T659	Baseplate_J domain-containing protein	NA
UHGV-1389490_18	eggNOG-mapper	563192.HMPREF0179_00195	homolog of phage Mu protein gp47	NA
UHGV-1389490_18	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1389490_18	COG	COG3299	NA	NA
UHGV-1389490_18	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1389490_19	PHROG	phrog_587	structural protein	head and packaging
UHGV-1389490_19	Pfam	PF11041	NA	DUF2612
UHGV-1389490_19	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-1389490_20	eggNOG-mapper	1121445.ATUZ01000011_gene713	NA	NA
UHGV-1389490_24	PHROG	phrog_3108	NA	unknown function
UHGV-1389490_24	eggNOG-mapper	342610.Patl_3555	lytic transglycosylase activity	NA
UHGV-1389490_24	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1389490_29	PHROG	phrog_824	NA	unknown function
UHGV-1389490_29	UniRef90	UniRef90_A0A356FZ71	VRR-NUC domain-containing protein (Fragment)	NA
UHGV-1389490_29	Structural annotation	PF08774	NA	NA
UHGV-1389490_30	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1389490_30	UniRef90	UniRef90_A0A843GVZ5	Helix-turn-helix domain-containing protein	NA
UHGV-1389490_30	eggNOG-mapper	565664.EFXG_01145	Helix-turn-helix domain	NA
UHGV-1389490_30	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1389490_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1389490_30	Structural annotation	PF02082, MF_01819, NF040939, COG3355	NA	NA
UHGV-1389490_32	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1389490_32	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1389490_32	UniRef90	UniRef90_S6ELL9	Replicative DNA helicase	NA
UHGV-1389490_32	eggNOG-mapper	1280689.AUJC01000011_gene1502	Participates in initiation and elongation during chromosome replication	NA
UHGV-1389490_32	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1389490_32	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1389490_32	COG	COG0305	Replicative DNA helicase	NA
UHGV-1389490_32	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1389490_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1389490_33	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1389490_33	UniRef90	UniRef90_A0A843GUL8	Type II methyltransferase	NA
UHGV-1389490_33	eggNOG-mapper	1223410.KN050846_gene2173	DNA methylase	NA
UHGV-1389490_33	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1389490_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1389490_33	COG	COG0863	DNA modification methylase	NA
UHGV-1389490_33	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1389490_39	KOfam	K10873	RAD52; DNA repair and recombination protein RAD52	NA
UHGV-1389490_39	UniRef90	UniRef90_A0A6M3LL51	Putative Rad52/22 double-strand break repair protein	NA
UHGV-1389490_39	eggNOG-mapper	232348.ADXL01000014_gene732	COG5055 Recombination DNA repair protein (RAD52 pathway)	NA
UHGV-1389490_39	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1389490_39	COG	COG5055	Recombinational DNA repair protein (RAD52 pathway)	NA
UHGV-1389490_40	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-1389490_40	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1389490_40	UniRef90	UniRef90_A0A843GWX5	YqaJ viral recombinase family protein	NA
UHGV-1389490_40	eggNOG-mapper	1089439.KB902270_gene2622	YqaJ-like viral recombinase domain	NA
UHGV-1389490_40	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1389490_40	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1389490_41	PHROG	phrog_18154	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1389490_41	UniRef90	UniRef90_A0A3C0G8D9	NA	NA
UHGV-1389490_42	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1389490_43	PHROG	phrog_25176	NA	unknown function
UHGV-1389490_43	eggNOG-mapper	1304877.KI519399_gene4992	NA	NA
UHGV-1389490_44	UniRef90	UniRef90_UPI001F034D68	nucleoside 5-triphosphatase RdgB (dHAPTP, dITP,XTP-specific)	NA
UHGV-1389490_44	eggNOG-mapper	388467.A19Y_4377	DNA restriction-modification system	NA
UHGV-1389490_44	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1389490_50	PHROG	phrog_3810	acetyltransferase	other
UHGV-1389490_50	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1389490_52	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1389490_53	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-1389490_56	PHROG	phrog_98	NA	unknown function
UHGV-1389490_56	UniRef90	UniRef90_A0A510WUU4	YopX domain-containing protein	NA
UHGV-1389490_56	eggNOG-mapper	1140002.I570_04025	YopX protein	NA
UHGV-1389490_56	Pfam	PF09643	YopX protein	YopX
UHGV-1389490_56	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1389490_56	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1389490_59	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-1389490_59	UniRef90	UniRef90_A0A822UCQ7	ParB-like nuclease	NA
UHGV-1389490_59	eggNOG-mapper	1347393.HG726021_gene369	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1389490_59	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-1389490_59	COG	COG0863	DNA modification methylase	NA
UHGV-1389490_60	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-1389490_60	UniRef90	UniRef90_A0A5Q2W2N5	Terminase small subunit	NA
UHGV-1389490_61	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1389490_61	UniRef90	UniRef90_A0A843HLI4	Phage terminase large subunit	NA
UHGV-1389490_61	eggNOG-mapper	563192.HMPREF0179_00169	Terminase RNaseH-like domain	NA
UHGV-1389490_61	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1389490_61	COG	COG5362	Phage terminase large subunit	NA
UHGV-1389490_61	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1389490_62	KOfam	K09961	NA	NA
UHGV-1389490_62	PHROG	phrog_146	portal protein	head and packaging
UHGV-1389490_62	UniRef90	UniRef90_E5Y1W1	HI1409 family phage-associated protein	NA
UHGV-1389490_62	eggNOG-mapper	563192.HMPREF0179_00170	Phage-associated protein, HI1409 family	NA
UHGV-1389490_62	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-1389490_62	COG	COG3567	NA	NA
UHGV-1389490_62	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-1389490_63	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-1389490_63	UniRef90	UniRef90_E5Y1W2	SPP1 gp7 family phage head morphogenesis protein	NA
UHGV-1389490_63	eggNOG-mapper	563192.HMPREF0179_00171	Portal protein	NA
UHGV-1389490_63	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1389490_63	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1389490_63	COG	COG2369	NA	NA
UHGV-1389490_63	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1389490_66	KOfam	K09960	NA	NA
UHGV-1389490_66	PHROG	phrog_530	head maturation protease	head and packaging
UHGV-1389490_66	eggNOG-mapper	563192.HMPREF0179_00172	NA	NA
UHGV-1389490_66	Pfam	PF09979	NA	DUF2213
UHGV-1389490_66	COG	COG3566	NA	NA