UHGV-1389570

Genome information

Genome length 42,014 bps

CDS count 74

Completeness 98.77% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-1389570
vOTU ID	vOTU-012720
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0278892
BioSample	SAMN02334027
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.77% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.16
Jumbo phage	No

Genome content
Genome length	42,014 bps
GC content	38.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	89.65%
Average CDS length	515.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1389570_3	PHROG	phrog_37604	NA	unknown function
UHGV-1389570_3	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-1389570_4	PHROG	phrog_881	holin	lysis
UHGV-1389570_4	UniRef90	UniRef90_UPI0018A8FD4D	phage holin	NA
UHGV-1389570_4	eggNOG-mapper	326426.Bbr_0299	Putative phage holin Dp-1	NA
UHGV-1389570_4	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1389570_4	Structural annotation	PF16938	NA	NA
UHGV-1389570_5	PHROG	phrog_11037	NA	unknown function
UHGV-1389570_5	UniRef90	UniRef90_A0A2V2EB84	EF-hand domain-containing protein	NA
UHGV-1389570_5	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-1389570_5	Structural annotation	PF08460, PF01551, NF040883, NF033202, COG0739, COG4991	NA	NA
UHGV-1389570_7	PHROG	phrog_22984	NA	unknown function
UHGV-1389570_9	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1389570_9	Structural annotation	NF040910	NA	NA
UHGV-1389570_10	Structural annotation	PF10618	NA	NA
UHGV-1389570_11	PHROG	phrog_24267	NA	unknown function
UHGV-1389570_11	UniRef90	UniRef90_R5HGH3	Phage minor structural protein	NA
UHGV-1389570_11	eggNOG-mapper	35344.A0A097PAT0_BPT12	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1389570_11	Structural annotation	COG4675	NA	NA
UHGV-1389570_13	UniRef90	UniRef90_A0A847CX66	NA	NA
UHGV-1389570_13	eggNOG-mapper	871968.DESME_08885	NA	NA
UHGV-1389570_13	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-1389570_14	Structural annotation	PF11650	NA	NA
UHGV-1389570_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-1389570_15	UniRef90	UniRef90_UPI001C115D36	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-1389570_15	eggNOG-mapper	1408437.JNJN01000001_gene1710	NA	NA
UHGV-1389570_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1389570_16	eggNOG-mapper	755731.Clo1100_2435	NA	NA
UHGV-1389570_17	PHROG	phrog_156	portal protein	head and packaging
UHGV-1389570_17	eggNOG-mapper	1408437.JNJN01000001_gene1708	NA	NA
UHGV-1389570_17	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1389570_19	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-1389570_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1389570_19	UniRef90	UniRef90_UPI00189AAAC0	DNA packaging protein	NA
UHGV-1389570_19	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-1389570_19	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1389570_19	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1389570_20	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1389570_20	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1389570_23	eggNOG-mapper	97139.C824_00043	NA	NA
UHGV-1389570_24	PHROG	phrog_7245	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-1389570_24	UniRef90	UniRef90_UPI001D06A358	zincin-like metallopeptidase domain-containing protein	NA
UHGV-1389570_24	eggNOG-mapper	97139.C824_00155	NA	NA
UHGV-1389570_24	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-1389570_24	Pfam	PF18818	Zincin-like metallopeptidase	MPTase-PolyVal
UHGV-1389570_24	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-1389570_24	Structural annotation	PF18818, PF08401, COG4227	NA	NA
UHGV-1389570_25	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1389570_46	PHROG	phrog_918	NA	unknown function
UHGV-1389570_46	UniRef90	UniRef90_UPI001D0B68F4	NA	NA
UHGV-1389570_46	eggNOG-mapper	411473.RUMCAL_00361	NA	NA
UHGV-1389570_46	Pfam	PF19791	NA	DUF6275
UHGV-1389570_46	Structural annotation	PF19791	NA	NA
UHGV-1389570_52	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-1389570_55	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1389570_55	UniRef90	UniRef90_A0A8I0ADW4	Phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1389570_55	eggNOG-mapper	546271.Selsp_1350	Phage replisome organizer, N-terminal domain protein	NA
UHGV-1389570_55	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1389570_55	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1389570_55	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1389570_55	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-1389570_58	PHROG	phrog_4973	NA	unknown function
UHGV-1389570_58	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1389570_59	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1389570_59	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1389570_59	UniRef90	UniRef90_A0A6G7Y1U6	Single-stranded DNA-binding protein	NA
UHGV-1389570_59	eggNOG-mapper	406818.XBJ1_3380	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1389570_59	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1389570_59	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1389570_59	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1389570_60	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1389570_60	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1389570_60	UniRef90	UniRef90_F8J189	Putative Holliday junction resolvase	NA
UHGV-1389570_60	eggNOG-mapper	508419.F8J189_9CAUD	magnesium ion binding	NA
UHGV-1389570_60	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1389570_60	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1389570_61	PHROG	phrog_1389	NA	unknown function
UHGV-1389570_61	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-1389570_61	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-1389570_62	PHROG	phrog_7566	NA	unknown function
UHGV-1389570_62	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-1389570_63	KOfam	K16898	addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]	NA
UHGV-1389570_63	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1389570_63	UniRef90	UniRef90_A0A3D5XTJ3	Cas_Cas4 domain-containing protein	NA
UHGV-1389570_63	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-1389570_63	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1389570_63	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1389570_64	PHROG	phrog_6244	NA	unknown function
UHGV-1389570_64	eggNOG-mapper	1399942.U3PIX9_9CAUD	NA	NA
UHGV-1389570_64	Structural annotation	PF05565	NA	NA
UHGV-1389570_65	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1389570_65	UniRef90	UniRef90_UPI001E498420	ERF family protein	NA
UHGV-1389570_65	eggNOG-mapper	318464.IO99_00460	ERF superfamily	NA
UHGV-1389570_65	Pfam	PF04404	ERF superfamily	ERF
UHGV-1389570_65	Structural annotation	PF04404	NA	NA
UHGV-1389570_67	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1389570_68	UniRef90	UniRef90_B0PAK0	DNA-binding helix-turn-helix protein	NA
UHGV-1389570_68	eggNOG-mapper	445972.ANACOL_01800	NA	NA
UHGV-1389570_68	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1389570_68	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1389570_69	Pfam	PF02915	Rubrerythrin	Rubrerythrin
UHGV-1389570_70	PHROG	phrog_819	tail protein	tail
UHGV-1389570_70	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1389570_71	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1389570_71	PHROG	phrog_819	tail protein	tail
UHGV-1389570_71	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-1389570_71	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1389570_73	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1389570_74	eggNOG-mapper	871968.DESME_08840	NA	NA