UHGV-1389778

Genome information

Genome length 31,525 bps

CDS count 52

Completeness 79.77% (medium-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-1389778
vOTU ID	vOTU-022972
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0219837
BioSample	SAMEA2737807
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.79
Jumbo phage	No

Genome content
Genome length	31,525 bps
GC content	33.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	87.77%
Average CDS length	535.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1389778_1	KOfam	K14059	int; integrase	NA
UHGV-1389778_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1389778_1	UniRef90	UniRef90_UPI00093149AF	site-specific integrase	NA
UHGV-1389778_1	eggNOG-mapper	585394.RHOM_14030	Belongs to the 'phage' integrase family	NA
UHGV-1389778_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1389778_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1389778_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1389778_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-1389778_2	UniRef90	UniRef90_A0A415G6W4	Abi family protein	NA
UHGV-1389778_2	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-1389778_2	PADLOC	AbiD	AbiD	Abi
UHGV-1389778_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-1389778_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-1389778_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-1389778_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1389778_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1389778_3	UniRef90	UniRef90_UPI000E52777C	helix-turn-helix domain-containing protein	NA
UHGV-1389778_3	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-1389778_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1389778_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1389778_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1389778_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1389778_4	UniRef90	UniRef90_UPI000E4B10A9	helix-turn-helix transcriptional regulator	NA
UHGV-1389778_4	eggNOG-mapper	471875.RUMLAC_01755	sequence-specific DNA binding	NA
UHGV-1389778_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1389778_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1389778_4	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1389778_5	eggNOG-mapper	411461.DORFOR_00023	NA	NA
UHGV-1389778_9	PHROG	phrog_585	NA	unknown function
UHGV-1389778_9	UniRef90	UniRef90_A0A3R6LXT7	NA	NA
UHGV-1389778_9	eggNOG-mapper	97138.C820_00628	NA	NA
UHGV-1389778_9	Pfam	PF10711	NA	DUF2513
UHGV-1389778_9	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-1389778_11	PHROG	phrog_6058	NA	unknown function
UHGV-1389778_11	UniRef90	UniRef90_UPI000D0EB5B4	DNA-binding protein	NA
UHGV-1389778_11	eggNOG-mapper	875454.BAEW01000002_gene501	NA	NA
UHGV-1389778_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1389778_17	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1389778_17	UniRef90	UniRef90_UPI000E550BC2	ParB/RepB/Spo0J family partition protein	NA
UHGV-1389778_17	eggNOG-mapper	626523.GCWU000342_01034	Belongs to the ParB family	NA
UHGV-1389778_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1389778_17	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1389778_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1389778_17	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1389778_22	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1389778_22	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-1389778_22	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-1389778_22	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1389778_22	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-1389778_23	PHROG	phrog_21026	NA	unknown function
UHGV-1389778_25	PHROG	phrog_8684	NA	unknown function
UHGV-1389778_25	UniRef90	UniRef90_A0A3D5WQK7	YopX domain-containing protein	NA
UHGV-1389778_25	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-1389778_25	Pfam	PF09643	YopX protein	YopX
UHGV-1389778_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1389778_26	PHROG	phrog_20593	NA	unknown function
UHGV-1389778_28	UniRef90	UniRef90_A0A373LPL3	Chemotaxis protein	NA
UHGV-1389778_28	eggNOG-mapper	1042156.CXIVA_01870	NA	NA
UHGV-1389778_28	Structural annotation	NF008671, COG4710	NA	NA
UHGV-1389778_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1389778_29	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-1389778_29	eggNOG-mapper	742740.HMPREF9474_04323	NA	NA
UHGV-1389778_29	Structural annotation	PF11726	NA	NA
UHGV-1389778_30	Structural annotation	PF07453	NA	NA
UHGV-1389778_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1389778_32	UniRef90	UniRef90_A0A415MTD9	HNH endonuclease	NA
UHGV-1389778_32	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-1389778_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1389778_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1389778_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1389778_34	UniRef90	UniRef90_A0A316SIU9	Terminase large subunit	NA
UHGV-1389778_34	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-1389778_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1389778_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1389778_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1389778_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1389778_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-1389778_35	UniRef90	UniRef90_A0A316S734	Phage portal protein	NA
UHGV-1389778_35	eggNOG-mapper	926561.KB900623_gene767	Phage portal protein, HK97 family	NA
UHGV-1389778_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1389778_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1389778_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1389778_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1389778_36	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1389778_36	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1389778_36	UniRef90	UniRef90_A0A1E3C332	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1389778_36	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1389778_36	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1389778_36	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1389778_36	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1389778_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-1389778_37	UniRef90	UniRef90_UPI001BA6BAB6	phage major capsid protein	NA
UHGV-1389778_37	eggNOG-mapper	1384484.AEQU_1180	Phage capsid family	NA
UHGV-1389778_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1389778_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1389778_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1389778_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1389778_38	PHROG	phrog_749	NA	unknown function
UHGV-1389778_38	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-1389778_38	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-1389778_39	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-1389778_39	eggNOG-mapper	1384484.AEQU_1178	NA	NA
UHGV-1389778_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1389778_39	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1389778_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1389778_40	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1389778_41	PHROG	phrog_5509	neck protein	connector
UHGV-1389778_41	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-1389778_41	eggNOG-mapper	1220589.CD32_01700	NA	NA
UHGV-1389778_41	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1389778_42	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-1389778_42	eggNOG-mapper	1121866.AUGK01000006_gene884	NA	NA
UHGV-1389778_42	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1389778_45	KOfam	K16551	AKAP9, AKAP350; A-kinase anchor protein 9	NA
UHGV-1389778_45	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1389778_45	UniRef90	UniRef90_A0A371ARP8	Phage tail tape measure protein	NA
UHGV-1389778_45	eggNOG-mapper	931626.Awo_c30950	Phage tail tape measure protein, TP901 family	NA
UHGV-1389778_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1389778_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1389778_45	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1389778_45	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1389778_46	UniRef90	UniRef90_A0A1S2LK78	Phage tail protein	NA
UHGV-1389778_46	eggNOG-mapper	1414720.CBYM010000001_gene708	PFAM Phage tail protein	NA
UHGV-1389778_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-1389778_46	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-1389778_47	PHROG	phrog_3558	tail protein	tail
UHGV-1389778_47	UniRef90	UniRef90_A0A373Y1Z4	Prophage_tail domain-containing protein	NA
UHGV-1389778_47	eggNOG-mapper	86416.Clopa_0355	TIGRFAM phage minor structural protein	NA
UHGV-1389778_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1389778_47	COG	COG4926	Phage-related protein	NA
UHGV-1389778_47	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1389778_50	eggNOG-mapper	411470.RUMGNA_00122	NA	NA