UHGV-1390056

Genome information

Genome length 31,532 bps

CDS count 30

Completeness 77.59% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-1390056
vOTU ID	vOTU-034159
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0219874
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.07
Jumbo phage	No

Genome content
Genome length	31,532 bps
GC content	53.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	95.26%
Average CDS length	1,004.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1390056_1	UniRef90	UniRef90_R6DRH1	Putative TnpX site-specific recombinase	NA
UHGV-1390056_1	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-1390056_2	PHROG	phrog_14350	NA	unknown function
UHGV-1390056_2	UniRef90	UniRef90_W2E8K0	NA	NA
UHGV-1390056_2	eggNOG-mapper	679201.HMPREF9334_00497	NA	NA
UHGV-1390056_4	PHROG	phrog_10797	NA	unknown function
UHGV-1390056_4	UniRef90	UniRef90_A0A1B1I041	Glycoprotease	NA
UHGV-1390056_4	eggNOG-mapper	936573.HMPREF1147_1743	NA	NA
UHGV-1390056_4	Structural annotation	PF06531	NA	NA
UHGV-1390056_5	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1390056_5	UniRef90	UniRef90_J5HM73	PF14359 domain protein	NA
UHGV-1390056_5	eggNOG-mapper	936573.HMPREF1147_1742	NA	NA
UHGV-1390056_5	Structural annotation	PF14359, COG3613	NA	NA
UHGV-1390056_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1390056_6	PHROG	phrog_822	amidase	lysis
UHGV-1390056_6	UniRef90	UniRef90_J5HEZ7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1390056_6	eggNOG-mapper	936573.HMPREF1147_1741	Ami_2	NA
UHGV-1390056_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1390056_6	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1390056_6	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1390056_7	PHROG	phrog_199	holin	lysis
UHGV-1390056_7	UniRef90	UniRef90_A0A1B3X2Q3	Endonuclease	NA
UHGV-1390056_7	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-1390056_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1390056_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1390056_8	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1390056_9	UniRef90	UniRef90_A0A1H7A3V2	Phage tail assembly chaperone protein	NA
UHGV-1390056_9	eggNOG-mapper	1123250.KB908441_gene1623	NA	NA
UHGV-1390056_10	eggNOG-mapper	1200557.JHWV01000001_gene262	NA	NA
UHGV-1390056_11	PHROG	phrog_1640	tail protein	tail
UHGV-1390056_11	eggNOG-mapper	585503.HMPREF7545_1745	NA	NA
UHGV-1390056_11	Structural annotation	PF03906	NA	NA
UHGV-1390056_12	PHROG	phrog_9880	NA	unknown function
UHGV-1390056_12	UniRef90	UniRef90_A0A5D6WDM4	LPD23 domain-containing protein	NA
UHGV-1390056_12	eggNOG-mapper	585503.HMPREF7545_1744	NA	NA
UHGV-1390056_12	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1390056_13	UniRef90	UniRef90_UPI001D02B10D	transglycosylase SLT domain-containing protein	NA
UHGV-1390056_13	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-1390056_13	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1390056_14	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1390056_14	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-1390056_14	Structural annotation	PF05384	NA	NA
UHGV-1390056_15	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1390056_15	eggNOG-mapper	1122963.AUHB01000020_gene2269	NA	NA
UHGV-1390056_15	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-1390056_15	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-1390056_16	PHROG	phrog_376	tail protein	tail
UHGV-1390056_16	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-1390056_16	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-1390056_16	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1390056_17	PHROG	phrog_394	tail protein	tail
UHGV-1390056_17	eggNOG-mapper	568816.Acin_1829	NA	NA
UHGV-1390056_17	Structural annotation	PF17212	NA	NA
UHGV-1390056_18	Structural annotation	PF21190, NF033675	NA	NA
UHGV-1390056_19	PHROG	phrog_212	major head protein	head and packaging
UHGV-1390056_19	eggNOG-mapper	699218.HMPREF0889_0284	NA	NA
UHGV-1390056_19	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1390056_19	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1390056_20	PHROG	phrog_458	protease	other
UHGV-1390056_20	eggNOG-mapper	699218.HMPREF0889_0285	NA	NA
UHGV-1390056_22	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1390056_22	UniRef90	UniRef90_UPI001D0148F4	portal protein	NA
UHGV-1390056_22	eggNOG-mapper	1401067.HMPREF0872_06810	Bacteriophage head to tail connecting protein	NA
UHGV-1390056_22	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1390056_22	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1390056_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1390056_24	PHROG	phrog_5902	NA	unknown function
UHGV-1390056_24	UniRef90	UniRef90_A0A1B1I1J7	Terminase	NA
UHGV-1390056_24	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-1390056_24	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1390056_24	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1390056_25	PHROG	phrog_4044	terminase small subunit	head and packaging
UHGV-1390056_25	UniRef90	UniRef90_K0MCC6	Phage terminase small subunit	NA
UHGV-1390056_25	eggNOG-mapper	1122947.FR7_2622	NA	NA
UHGV-1390056_25	Structural annotation	PF07141	NA	NA
UHGV-1390056_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1390056_26	UniRef90	UniRef90_J5HEW4	PF07374 family protein	NA
UHGV-1390056_26	eggNOG-mapper	936573.HMPREF1147_1713	NA	NA
UHGV-1390056_26	Pfam	PF07374	NA	DUF1492
UHGV-1390056_26	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-1390056_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1390056_27	eggNOG-mapper	1392502.JNIO01000002_gene51	NA	NA
UHGV-1390056_27	Structural annotation	PF21578, TIGR00166, COG5655	NA	NA
UHGV-1390056_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1390056_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1390056_28	UniRef90	UniRef90_UPI000308E9B6	single-stranded DNA-binding protein	NA
UHGV-1390056_28	eggNOG-mapper	484770.UFO1_4529	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1390056_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1390056_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1390056_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1390056_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1390056_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1390056_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1390056_29	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1390056_29	UniRef90	UniRef90_A0A0E1KQR8	Methyltransferase	NA
UHGV-1390056_29	eggNOG-mapper	1449342.JQMR01000001_gene1025	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-1390056_29	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1390056_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1390056_29	COG	COG0863	DNA modification methylase	NA
UHGV-1390056_29	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA