UHGV-1390558

Genome information

Genome length 40,517 bps

CDS count 56

Completeness 97.13% (high-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-1390558
vOTU ID	vOTU-065727
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0271197
BioSample	SAMN02333957
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.89
Jumbo phage	No

Genome content
Genome length	40,517 bps
GC content	33.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.66%
Average CDS length	666.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1390558_1	KOfam	K14059	int; integrase	NA
UHGV-1390558_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1390558_1	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-1390558_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-1390558_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1390558_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1390558_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1390558_3	KOfam	K14059	int; integrase	NA
UHGV-1390558_3	PHROG	phrog_1	integrase	integration and excision
UHGV-1390558_3	UniRef90	UniRef90_UPI001899FB9B	tyrosine-type recombinase/integrase	NA
UHGV-1390558_3	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-1390558_3	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1390558_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1390558_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1390558_3	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1390558_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1390558_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1390558_5	UniRef90	UniRef90_R7NRZ2	HTH cro/C1-type domain-containing protein	NA
UHGV-1390558_5	eggNOG-mapper	537013.CLOSTMETH_02500	NA	NA
UHGV-1390558_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1390558_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1390558_5	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1390558_13	PHROG	phrog_674	NA	unknown function
UHGV-1390558_13	UniRef90	UniRef90_UPI001CD1B423	NA	NA
UHGV-1390558_13	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-1390558_13	Pfam	PF07083	NA	DUF1351
UHGV-1390558_13	Structural annotation	PF07083	NA	NA
UHGV-1390558_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1390558_14	UniRef90	UniRef90_UPI000985D1CB	ERF family protein	NA
UHGV-1390558_14	eggNOG-mapper	1204534.J9QD21_9CAUD	ERF superfamily	NA
UHGV-1390558_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-1390558_14	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-1390558_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1390558_15	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-1390558_15	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-1390558_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1390558_16	PHROG	phrog_32498	NA	unknown function
UHGV-1390558_16	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-1390558_16	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-1390558_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1390558_17	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1390558_17	UniRef90	UniRef90_R5XZW2	HNH domain-containing protein	NA
UHGV-1390558_17	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-1390558_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1390558_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1390558_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1390558_19	UniRef90	UniRef90_UPI001B3C5EDC	single-stranded DNA-binding protein	NA
UHGV-1390558_19	eggNOG-mapper	1410617.JHXH01000001_gene879	Single-stranded DNA-binding protein	NA
UHGV-1390558_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1390558_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1390558_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1390558_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1390558_19	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1390558_20	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1390558_20	UniRef90	UniRef90_UPI0011C364A6	helix-turn-helix domain-containing protein	NA
UHGV-1390558_20	eggNOG-mapper	1122172.KB890259_gene1441	NA	NA
UHGV-1390558_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1390558_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1390558_20	Structural annotation	PF13730, NF040939, COG3355	NA	NA
UHGV-1390558_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1390558_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1390558_21	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-1390558_21	eggNOG-mapper	796942.HMPREF9623_00441	NA	NA
UHGV-1390558_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1390558_21	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-1390558_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1390558_21	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-1390558_29	PHROG	phrog_25385	NA	unknown function
UHGV-1390558_29	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-1390558_33	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1390558_33	UniRef90	UniRef90_A0A134C0X6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1390558_33	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1390558_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1390558_33	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1390558_39	UniRef90	UniRef90_A0A373B1N4	ArdcN domain-containing protein	NA
UHGV-1390558_39	eggNOG-mapper	1280679.ATVX01000009_gene1728	NA	NA
UHGV-1390558_39	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-1390558_43	PHROG	phrog_13890	NA	unknown function
UHGV-1390558_43	Structural annotation	PF03869, NF010256	NA	NA
UHGV-1390558_44	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1390558_44	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1390558_44	UniRef90	UniRef90_UPI0003FF5243	terminase small subunit	NA
UHGV-1390558_44	eggNOG-mapper	552525.B5LPQ9_9CAUD	Terminase small subunit	NA
UHGV-1390558_44	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1390558_44	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1390558_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1390558_45	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1390558_45	UniRef90	UniRef90_A0A6L5YGA2	Terminase_3 domain-containing protein	NA
UHGV-1390558_45	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1390558_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1390558_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-1390558_45	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1390558_46	PHROG	phrog_156	portal protein	head and packaging
UHGV-1390558_46	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1390558_46	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1390558_47	KOfam	K07584	NA	NA
UHGV-1390558_47	PHROG	phrog_4478	peptidase	other
UHGV-1390558_47	UniRef90	UniRef90_UPI0005B2A047	ribosomal-processing cysteine protease Prp	NA
UHGV-1390558_47	eggNOG-mapper	1347392.CCEZ01000026_gene2980	Cysteine protease Prp	NA
UHGV-1390558_47	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1390558_47	COG	COG2868	NA	NA
UHGV-1390558_48	PHROG	phrog_13908	NA	unknown function
UHGV-1390558_48	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1390558_49	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1390558_49	UniRef90	UniRef90_A0A6L5YGG5	N4-gp56 family major capsid protein	NA
UHGV-1390558_49	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1390558_49	Pfam	PF13252	NA	DUF4043
UHGV-1390558_49	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1390558_49	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1390558_50	PHROG	phrog_15239	NA	unknown function
UHGV-1390558_51	PHROG	phrog_12105	NA	unknown function
UHGV-1390558_52	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1390558_52	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-1390558_52	Structural annotation	PF11134, NF038015, TIGR03721, COG3823	NA	NA
UHGV-1390558_54	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1390558_55	PHROG	phrog_22978	NA	unknown function
UHGV-1390558_55	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-1390558_56	eggNOG-mapper	3988.XP_002532145.1	Polygalacturonase QRT3-like	NA