UHGV-1390667

Genome information

vOTU vOTU-020972

Genome length 47,284 bps

CDS count 54

Completeness 78.93% (medium-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-1390667
vOTU ID	vOTU-020972
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0302177
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.44
Jumbo phage	No

Genome content
Genome length	47,284 bps
GC content	42.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	95.06%
Average CDS length	835.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1390667_1	UniRef90	UniRef90_B1C7M3	Ribbon-helix-helix protein, CopG family	NA
UHGV-1390667_1	eggNOG-mapper	445971.ANASTE_00725	NA	NA
UHGV-1390667_1	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-1390667_2	PHROG	phrog_7940	NA	unknown function
UHGV-1390667_2	UniRef90	UniRef90_A0A1B1HZZ8	Toxin Bro	NA
UHGV-1390667_2	eggNOG-mapper	445971.ANASTE_00727	BRO family, N-terminal domain	NA
UHGV-1390667_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1390667_2	COG	COG3617	Prophage antirepressor	NA
UHGV-1390667_2	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-1390667_3	Structural annotation	PF08281, MF_00245, NF001075, COG2739	NA	NA
UHGV-1390667_5	PHROG	phrog_18996	NA	unknown function
UHGV-1390667_5	UniRef90	UniRef90_A0A848BFH6	Prevent-host-death protein	NA
UHGV-1390667_5	eggNOG-mapper	1273103.NM10_01746	NA	NA
UHGV-1390667_6	KOfam	K07273	acm; lysozyme	NA
UHGV-1390667_6	PHROG	phrog_291	endolysin	lysis
UHGV-1390667_6	UniRef90	UniRef90_A0A1H0P8Q4	Glycosyl hydrolases family 25	NA
UHGV-1390667_6	eggNOG-mapper	1280706.AUJE01000010_gene684	Glycosyl hydrolase family 25	NA
UHGV-1390667_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1390667_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1390667_6	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-1390667_7	PHROG	phrog_199	holin	lysis
UHGV-1390667_7	UniRef90	UniRef90_UPI001D00AA48	phage holin family protein	NA
UHGV-1390667_7	eggNOG-mapper	1392502.JNIO01000008_gene1277	Bacteriophage holin family	NA
UHGV-1390667_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1390667_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1390667_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1390667_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1390667_8	PHROG	phrog_10691	NA	unknown function
UHGV-1390667_8	UniRef90	UniRef90_UPI0009DF25C8	phage tail tip lysozyme	NA
UHGV-1390667_8	eggNOG-mapper	1485543.JMME01000020_gene773	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)	NA
UHGV-1390667_8	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1390667_8	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1390667_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1390667_10	UniRef90	UniRef90_UPI00047F33D6	Hint domain-containing protein	NA
UHGV-1390667_10	eggNOG-mapper	1485543.JMME01000020_gene776	NA	NA
UHGV-1390667_10	Pfam	PF05203	Hom_end-associated Hint	Hom_end_hint
UHGV-1390667_10	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-1390667_10	Structural annotation	PF07591, NF038136, TIGR03017, COG4942	NA	NA
UHGV-1390667_11	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-1390667_12	eggNOG-mapper	1401067.HMPREF0872_03755	NA	NA
UHGV-1390667_12	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-1390667_13	Structural annotation	PF05899, MF_01537, NF007875, COG3123	NA	NA
UHGV-1390667_15	PHROG	phrog_13890	NA	unknown function
UHGV-1390667_15	UniRef90	UniRef90_UPI000B499598	Arc family DNA-binding protein	NA
UHGV-1390667_15	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-1390667_15	Structural annotation	PF19807, NF010256, COG4453	NA	NA
UHGV-1390667_18	eggNOG-mapper	1123250.KB908441_gene1623	NA	NA
UHGV-1390667_20	eggNOG-mapper	537007.BLAHAN_05238	translation initiation factor activity	NA
UHGV-1390667_20	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1390667_21	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-1390667_21	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-1390667_21	Structural annotation	NF012201	NA	NA
UHGV-1390667_22	PHROG	phrog_5417	NA	unknown function
UHGV-1390667_22	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-1390667_22	eggNOG-mapper	1459636.NTE_01434	NA	NA
UHGV-1390667_22	Structural annotation	PF12571	NA	NA
UHGV-1390667_23	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-1390667_23	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1390667_23	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-1390667_24	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-1390667_24	Structural annotation	PF20387	NA	NA
UHGV-1390667_25	Structural annotation	PF20387	NA	NA
UHGV-1390667_27	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1390667_27	UniRef90	UniRef90_UPI0004838F8E	NA	NA
UHGV-1390667_27	eggNOG-mapper	1485543.JMME01000020_gene788	NA	NA
UHGV-1390667_27	Pfam	PF17236	NA	DUF5309
UHGV-1390667_27	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-1390667_28	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-1390667_30	PHROG	phrog_1216	portal protein	head and packaging
UHGV-1390667_30	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-1390667_30	eggNOG-mapper	1485543.JMME01000020_gene791	Membrane	NA
UHGV-1390667_30	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1390667_30	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1390667_31	PHROG	phrog_5902	NA	unknown function
UHGV-1390667_31	UniRef90	UniRef90_A0A414NWF6	DOD-type homing endonuclease domain-containing protein	NA
UHGV-1390667_31	eggNOG-mapper	1485543.JMME01000020_gene792	Terminase RNaseH-like domain	NA
UHGV-1390667_31	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1390667_31	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1390667_32	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1390667_32	UniRef90	UniRef90_A0A414NWE7	Helix-turn-helix domain-containing protein	NA
UHGV-1390667_32	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-1390667_32	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1390667_32	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1390667_32	Structural annotation	PF07141	NA	NA
UHGV-1390667_34	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1390667_38	PHROG	phrog_8514	NA	unknown function
UHGV-1390667_38	eggNOG-mapper	1523503.JPMY01000012_gene3228	NA	NA
UHGV-1390667_39	Structural annotation	PF05631, MF_01529, TIGR00900, COG2807	NA	NA
UHGV-1390667_40	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1390667_40	PHROG	phrog_923	NA	unknown function
UHGV-1390667_40	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1390667_40	Structural annotation	PF13599, NF011744	NA	NA
UHGV-1390667_41	Structural annotation	PF02888	NA	NA
UHGV-1390667_45	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1390667_45	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-1390667_45	UniRef90	UniRef90_A0A7Y0U355	Cytosine-specific methyltransferase	NA
UHGV-1390667_45	eggNOG-mapper	585503.HMPREF7545_1724	Cytosine-specific methyltransferase	NA
UHGV-1390667_45	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1390667_45	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1390667_45	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-1390667_46	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1390667_46	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1390667_46	UniRef90	UniRef90_A0A1G6NRS4	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1390667_46	eggNOG-mapper	585503.HMPREF7545_1724	Cytosine-specific methyltransferase	NA
UHGV-1390667_46	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1390667_46	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1390667_46	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1390667_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1390667_46	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1390667_47	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1390667_47	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1390667_47	UniRef90	UniRef90_C9LU68	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1390667_47	eggNOG-mapper	864563.HMPREF9166_1267	crossover junction endodeoxyribonuclease RusA	NA
UHGV-1390667_47	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1390667_47	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1390667_47	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1390667_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1390667_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1390667_52	UniRef90	UniRef90_A0A6B4JHN5	Single-stranded DNA-binding protein	NA
UHGV-1390667_52	eggNOG-mapper	536233.CLO_0510	Single-strand binding protein family	NA
UHGV-1390667_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1390667_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1390667_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1390667_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1390667_52	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1390667_53	PHROG	phrog_9804	NA	unknown function
UHGV-1390667_53	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-1390667_53	Structural annotation	PF11417	NA	NA
UHGV-1390667_54	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1390667_54	UniRef90	UniRef90_UPI0011C364A6	helix-turn-helix domain-containing protein	NA
UHGV-1390667_54	eggNOG-mapper	1035196.HMPREF9998_01752	NA	NA
UHGV-1390667_54	COG	COG3935	DNA replication protein DnaD	NA