UHGV-1390922

Genome information

Genome length 42,031 bps

CDS count 57

Completeness 99.51% (high-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-1390922
vOTU ID	vOTU-008820
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0278991
BioSample	SAMEA2467030
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.51% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.25
Jumbo phage	No

Genome content
Genome length	42,031 bps
GC content	57.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	94.37%
Average CDS length	699.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1390922_1	PHROG	phrog_21498	NA	unknown function
UHGV-1390922_1	eggNOG-mapper	445970.ALIPUT_01611	DNA binding	NA
UHGV-1390922_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1390922_2	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1390922_6	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1390922_6	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-1390922_6	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-1390922_6	Pfam	PF06356	NA	DUF1064
UHGV-1390922_6	Structural annotation	PF06356	NA	NA
UHGV-1390922_7	Structural annotation	NF033716	NA	NA
UHGV-1390922_10	PHROG	phrog_31029	NA	unknown function
UHGV-1390922_11	PHROG	phrog_38832	NA	unknown function
UHGV-1390922_11	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-1390922_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1390922_12	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1390922_12	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-1390922_12	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1390922_12	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1390922_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1390922_12	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1390922_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1390922_12	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1390922_15	Structural annotation	PF05082	NA	NA
UHGV-1390922_16	eggNOG-mapper	1250232.JQNJ01000001_gene2876	Leucine rich repeats (6 copies)	NA
UHGV-1390922_16	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1390922_17	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-1390922_17	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-1390922_20	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-1390922_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1390922_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1390922_25	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-1390922_25	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-1390922_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1390922_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1390922_25	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1390922_27	eggNOG-mapper	469381.Dpep_1324	PFAM Endonuclease Exonuclease phosphatase	NA
UHGV-1390922_27	COG	COG2374	Predicted extracellular nuclease	NA
UHGV-1390922_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1390922_28	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-1390922_29	KOfam	K14059	int; integrase	NA
UHGV-1390922_29	PHROG	phrog_1	integrase	integration and excision
UHGV-1390922_29	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-1390922_29	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-1390922_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1390922_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1390922_29	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1390922_30	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-1390922_30	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1390922_33	PHROG	phrog_5783	NA	unknown function
UHGV-1390922_33	UniRef90	UniRef90_A0A7X2P6J8	NYN domain-containing protein	NA
UHGV-1390922_33	eggNOG-mapper	742742.HMPREF9452_00448	NYN domain	NA
UHGV-1390922_33	Pfam	PF01936	NYN domain	NYN
UHGV-1390922_33	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-1390922_33	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-1390922_34	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-1390922_34	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1390922_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1390922_34	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-1390922_35	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-1390922_35	PHROG	phrog_1794	amidase	lysis
UHGV-1390922_35	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1390922_35	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-1390922_35	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1390922_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1390922_35	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1390922_36	PHROG	phrog_6918	holin	lysis
UHGV-1390922_36	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-1390922_36	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1390922_36	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1390922_36	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1390922_38	PHROG	phrog_937	hemolysin	other
UHGV-1390922_38	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-1390922_39	PHROG	phrog_5240	tail fiber protein	tail
UHGV-1390922_39	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1390922_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1390922_41	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-1390922_41	PHROG	phrog_819	tail protein	tail
UHGV-1390922_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1390922_41	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1390922_42	Structural annotation	PF18962, NF011773	NA	NA
UHGV-1390922_43	PHROG	phrog_28077	NA	unknown function
UHGV-1390922_43	UniRef90	UniRef90_A0A1Y3SMK5	MuF_C domain-containing protein	NA
UHGV-1390922_43	eggNOG-mapper	693746.OBV_23800	NA	NA
UHGV-1390922_44	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-1390922_44	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1390922_46	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-1390922_47	PHROG	phrog_12105	NA	unknown function
UHGV-1390922_48	PHROG	phrog_15239	NA	unknown function
UHGV-1390922_49	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1390922_49	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-1390922_49	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1390922_49	Pfam	PF13252	NA	DUF4043
UHGV-1390922_49	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1390922_49	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1390922_50	PHROG	phrog_13908	NA	unknown function
UHGV-1390922_50	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1390922_51	PHROG	phrog_156	portal protein	head and packaging
UHGV-1390922_51	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1390922_51	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1390922_52	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1390922_52	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-1390922_52	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1390922_53	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1390922_53	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1390922_53	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-1390922_53	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1390922_53	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1390922_53	COG	COG1783	Phage terminase large subunit	NA
UHGV-1390922_53	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1390922_54	Structural annotation	PF16677	NA	NA
UHGV-1390922_55	UniRef90	UniRef90_A0A8G1TBS8	Conjugal transfer protein	NA
UHGV-1390922_55	eggNOG-mapper	1235790.C805_01029	Cysteine-rich KTR	NA
UHGV-1390922_55	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-1390922_56	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1390922_56	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-1390922_56	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-1390922_57	PHROG	phrog_21498	NA	unknown function
UHGV-1390922_57	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-1390922_57	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA