UHGV-1391880

Genome information

Genome length 40,607 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9620

Prediction confidence Confident

Genome information
Genome ID	UHGV-1391880
vOTU ID	vOTU-067993
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0271649
BioSample	NA
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9620
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.29
Jumbo phage	No

Genome content
Genome length	40,607 bps
GC content	31.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	87.64%
Average CDS length	559.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1391880_1	Pfam	PF03382	NA	DUF285
UHGV-1391880_1	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-1391880_4	PHROG	phrog_2270	NA	unknown function
UHGV-1391880_4	eggNOG-mapper	1347392.CCEZ01000005_gene1246	Phage minor structural protein	NA
UHGV-1391880_4	COG	COG4926	Phage-related protein	NA
UHGV-1391880_6	PHROG	phrog_17321	NA	unknown function
UHGV-1391880_6	UniRef90	UniRef90_UPI00073EB258	phage tail tape measure protein	NA
UHGV-1391880_6	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-1391880_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1391880_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1391880_6	COG	COG1340	NA	NA
UHGV-1391880_6	Structural annotation	PF10145, PF16746, TIGR01760	NA	NA
UHGV-1391880_8	UniRef90	UniRef90_UPI001B2E3F74	phage tail protein	NA
UHGV-1391880_8	eggNOG-mapper	1139219.I569_00238	NA	NA
UHGV-1391880_8	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1391880_9	PHROG	phrog_5509	neck protein	connector
UHGV-1391880_9	eggNOG-mapper	1347392.CCEZ01000045_gene11	NA	NA
UHGV-1391880_11	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-1391880_11	UniRef90	UniRef90_A0A4Z0H2S6	Phage head-tail adapter protein	NA
UHGV-1391880_11	eggNOG-mapper	1347392.CCEZ01000045_gene13	NA	NA
UHGV-1391880_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1391880_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1391880_12	PHROG	phrog_749	NA	unknown function
UHGV-1391880_12	UniRef90	UniRef90_W7DT46	Gp6 protein	NA
UHGV-1391880_12	eggNOG-mapper	1347392.CCEZ01000045_gene14	NA	NA
UHGV-1391880_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-1391880_13	UniRef90	UniRef90_A0A0C3H6H2	Major capsid protein	NA
UHGV-1391880_13	eggNOG-mapper	1347392.CCEZ01000045_gene16	Phage capsid family	NA
UHGV-1391880_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1391880_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1391880_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1391880_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1391880_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1391880_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1391880_14	UniRef90	UniRef90_A0A7V6Y6F7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1391880_14	eggNOG-mapper	279808.SH1773	Clp protease	NA
UHGV-1391880_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1391880_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1391880_14	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1391880_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-1391880_15	UniRef90	UniRef90_A0A1I0FEH4	Phage portal protein, HK97 family	NA
UHGV-1391880_15	eggNOG-mapper	1027396.LMOSA_21400	Phage portal protein	NA
UHGV-1391880_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1391880_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1391880_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1391880_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1391880_16	UniRef90	UniRef90_A0A1I0FCW3	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1391880_16	eggNOG-mapper	864178.E2ELI2_9CAUD	Phage Terminase	NA
UHGV-1391880_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1391880_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1391880_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1391880_18	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1391880_18	UniRef90	UniRef90_A0A371IJQ7	RNA polymerase subunit sigma-70	NA
UHGV-1391880_18	eggNOG-mapper	926561.KB900623_gene765	NA	NA
UHGV-1391880_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1391880_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1391880_20	UniRef90	UniRef90_UPI0004E18681	NA	NA
UHGV-1391880_20	eggNOG-mapper	1408311.JNJM01000040_gene948	NA	NA
UHGV-1391880_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1391880_20	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-1391880_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1391880_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1391880_22	UniRef90	UniRef90_A0A7T7AMD8	Single-stranded DNA-binding protein	NA
UHGV-1391880_22	eggNOG-mapper	879308.HMPREF9130_1184	Single-stranded DNA-binding protein	NA
UHGV-1391880_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1391880_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1391880_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1391880_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1391880_22	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1391880_23	UniRef90	UniRef90_B0S4B3	DarA_C domain-containing protein	NA
UHGV-1391880_23	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-1391880_23	Structural annotation	PF18789	NA	NA
UHGV-1391880_24	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-1391880_24	UniRef90	UniRef90_UPI001C112292	MazG-like family protein	NA
UHGV-1391880_24	eggNOG-mapper	879308.HMPREF9130_0428	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1391880_24	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1391880_24	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1391880_31	PHROG	phrog_236	nucleotide kinase	other
UHGV-1391880_31	UniRef90	UniRef90_A0A496PDH8	NA	NA
UHGV-1391880_31	eggNOG-mapper	1321779.HMPREF1984_00547	NA	NA
UHGV-1391880_31	Pfam	PF11753	NA	DUF3310
UHGV-1391880_36	PHROG	phrog_3784	NA	unknown function
UHGV-1391880_36	eggNOG-mapper	1033733.CAEK01000007_gene1669	NA	NA
UHGV-1391880_37	PHROG	phrog_3784	NA	unknown function
UHGV-1391880_37	eggNOG-mapper	1118055.CAGU01000029_gene35	NA	NA
UHGV-1391880_38	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1391880_38	UniRef90	UniRef90_A0A848R652	NAD(P)-dependent oxidoreductase	NA
UHGV-1391880_38	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-1391880_38	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1391880_38	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-1391880_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1391880_39	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1391880_39	UniRef90	UniRef90_UPI001C116674	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1391880_39	eggNOG-mapper	1118057.CAGX01000020_gene1647	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1391880_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1391880_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1391880_39	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1391880_40	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1391880_40	eggNOG-mapper	146269.A8YQM0_9CAUD	calcium ion binding	NA
UHGV-1391880_40	Structural annotation	PF08222, NF033788, COG4901	NA	NA
UHGV-1391880_41	PHROG	phrog_10048	NA	unknown function
UHGV-1391880_41	eggNOG-mapper	1111134.HMPREF1253_1200	NA	NA
UHGV-1391880_41	Structural annotation	PF06420, TIGR00607, COG5055	NA	NA
UHGV-1391880_42	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1391880_42	UniRef90	UniRef90_UPI000985467B	host-nuclease inhibitor Gam family protein	NA
UHGV-1391880_42	eggNOG-mapper	632518.Calow_0816	Bacteriophage Mu Gam like protein	NA
UHGV-1391880_42	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-1391880_42	Structural annotation	PF07352	NA	NA
UHGV-1391880_49	PHROG	phrog_7735	excisionase	integration and excision
UHGV-1391880_49	Structural annotation	PF21531, NF033787, COG3311	NA	NA
UHGV-1391880_53	UniRef90	UniRef90_UPI00164D098E	helix-turn-helix domain-containing protein	NA
UHGV-1391880_53	eggNOG-mapper	469618.FVAG_01279	NA	NA
UHGV-1391880_53	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1391880_54	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1391880_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1391880_54	UniRef90	UniRef90_UPI000310D0AA	XRE family transcriptional regulator	NA
UHGV-1391880_54	eggNOG-mapper	1033733.CAEK01000001_gene164	Peptidase S24-like	NA
UHGV-1391880_54	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1391880_54	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1391880_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1391880_54	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1391880_55	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1391880_55	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1391880_55	UniRef90	UniRef90_A0A1M4ZHQ6	DNA polymerase-3 subunit epsilon	NA
UHGV-1391880_55	eggNOG-mapper	1234409.C683_0628	EXOIII	NA
UHGV-1391880_55	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1391880_55	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1391880_55	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-1391880_55	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-1391880_56	KOfam	K14059	int; integrase	NA
UHGV-1391880_56	PHROG	phrog_1	integrase	integration and excision
UHGV-1391880_56	UniRef90	UniRef90_A0A2N6SUH1	Tyr recombinase domain-containing protein	NA
UHGV-1391880_56	eggNOG-mapper	1280689.AUJC01000003_gene922	Belongs to the 'phage' integrase family	NA
UHGV-1391880_56	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1391880_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1391880_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1391880_56	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1391880_59	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-1391880_60	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1391880_60	UniRef90	UniRef90_F9MRE0	AP2 domain protein	NA
UHGV-1391880_60	eggNOG-mapper	879308.HMPREF9130_0377	NA	NA
UHGV-1391880_60	Structural annotation	PF18337, PF00847	NA	NA
UHGV-1391880_61	PHROG	phrog_1299	holin	lysis
UHGV-1391880_61	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1391880_62	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1391880_62	PHROG	phrog_435	endolysin	lysis
UHGV-1391880_62	UniRef90	UniRef90_A0A233VXT5	MurNAc-LAA domain-containing protein	NA
UHGV-1391880_62	eggNOG-mapper	1118057.CAGX01000020_gene1590	mannosyl-glycoprotein	NA
UHGV-1391880_62	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1391880_62	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1391880_62	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1391880_64	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA