UHGV-1392128

Genome information

Genome length 31,619 bps

CDS count 35

Completeness 53.98% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-1392128
vOTU ID	vOTU-034197
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0220383
BioSample	SAMEA3449344
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.2
Jumbo phage	No

Genome content
Genome length	31,619 bps
GC content	46.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	90.88%
Average CDS length	824.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1392128_1	PHROG	phrog_4259	NA	unknown function
UHGV-1392128_1	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-1392128_1	eggNOG-mapper	742733.HMPREF9469_05037	NA	NA
UHGV-1392128_2	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1392128_2	UniRef90	UniRef90_A0A4D6E4M9	HNH endonuclease	NA
UHGV-1392128_2	eggNOG-mapper	691965.D4P7C0_9CAUD	NA	NA
UHGV-1392128_3	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-1392128_3	UniRef90	UniRef90_D4P7C3	Structural protein	NA
UHGV-1392128_3	eggNOG-mapper	691965.D4P7C3_9CAUD	NA	NA
UHGV-1392128_4	PHROG	phrog_7021	NA	unknown function
UHGV-1392128_4	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-1392128_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1392128_5	UniRef90	UniRef90_A0A550GX82	Terminase	NA
UHGV-1392128_5	eggNOG-mapper	428125.CLOLEP_01409	Phage Terminase	NA
UHGV-1392128_5	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1392128_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1392128_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1392128_5	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1392128_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-1392128_6	UniRef90	UniRef90_UPI001D05DA00	phage portal protein	NA
UHGV-1392128_6	eggNOG-mapper	411460.RUMTOR_01348	Phage portal protein	NA
UHGV-1392128_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1392128_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1392128_7	KOfam	K06904	NA	NA
UHGV-1392128_7	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-1392128_7	UniRef90	UniRef90_A0A1Y4MXD5	Phage major capsid protein	NA
UHGV-1392128_7	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-1392128_7	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1392128_7	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-1392128_9	PHROG	phrog_4270	NA	unknown function
UHGV-1392128_9	eggNOG-mapper	428125.CLOLEP_01413	NA	NA
UHGV-1392128_9	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1392128_10	PHROG	phrog_78	tail terminator	connector
UHGV-1392128_10	UniRef90	UniRef90_A0A5J6D7U9	Tail terminator	NA
UHGV-1392128_10	eggNOG-mapper	691965.D4P7D8_9CAUD	NA	NA
UHGV-1392128_10	Structural annotation	PF20765	NA	NA
UHGV-1392128_11	PHROG	phrog_2645	major tail protein	tail
UHGV-1392128_11	UniRef90	UniRef90_A0A644ZQB8	Big_5 domain-containing protein	NA
UHGV-1392128_11	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-1392128_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1392128_12	PHROG	phrog_4282	NA	unknown function
UHGV-1392128_12	eggNOG-mapper	428125.CLOLEP_01416	NA	NA
UHGV-1392128_13	PHROG	phrog_4338	NA	unknown function
UHGV-1392128_13	eggNOG-mapper	428125.CLOLEP_01417	NA	NA
UHGV-1392128_14	UniRef90	UniRef90_A0A7X5IVV8	HK97 gp10 family phage protein	NA
UHGV-1392128_14	eggNOG-mapper	742733.HMPREF9469_05021	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1392128_14	Structural annotation	TIGR01725	NA	NA
UHGV-1392128_15	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-1392128_15	eggNOG-mapper	665956.HMPREF1032_00686	phage tail tape measure protein	NA
UHGV-1392128_15	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1392128_15	COG	COG5412	Phage-related protein	NA
UHGV-1392128_16	Structural annotation	PF06865, MF_01537, NF007875, COG3123	NA	NA
UHGV-1392128_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1392128_18	UniRef90	UniRef90_A0A1W1Z4I2	Phage-related protein	NA
UHGV-1392128_18	eggNOG-mapper	632245.CLP_1659	tail component	NA
UHGV-1392128_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-1392128_18	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1392128_19	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1392128_19	eggNOG-mapper	195103.CPF_1574	Prophage endopeptidase tail	NA
UHGV-1392128_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1392128_19	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1392128_19	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1392128_19	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1392128_20	PHROG	phrog_372	tail protein	tail
UHGV-1392128_20	UniRef90	UniRef90_A0A3E3E6C0	Pilus assembly protein	NA
UHGV-1392128_20	eggNOG-mapper	469596.HMPREF9488_01319	NA	NA
UHGV-1392128_20	Pfam	PF05895	NA	DUF859
UHGV-1392128_21	Structural annotation	PF16640	NA	NA
UHGV-1392128_24	PHROG	phrog_1493	endolysin	lysis
UHGV-1392128_24	UniRef90	UniRef90_A0A1V5Q5W6	Putative peptidoglycan binding domain protein	NA
UHGV-1392128_24	eggNOG-mapper	397290.C810_01418	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-1392128_24	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1392128_24	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-1392128_24	Structural annotation	PF18342, PF01471, PF00877, NF038080, COG4991, COG3409, COG0791	NA	NA
UHGV-1392128_25	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-1392128_26	PHROG	phrog_881	holin	lysis
UHGV-1392128_26	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-1392128_26	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-1392128_26	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1392128_26	Structural annotation	PF16938	NA	NA
UHGV-1392128_28	PHROG	phrog_16490	NA	unknown function
UHGV-1392128_28	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1392128_29	PHROG	phrog_20016	NA	unknown function
UHGV-1392128_29	Structural annotation	PF00386, NF033147	NA	NA
UHGV-1392128_31	PHROG	phrog_1233	NA	unknown function
UHGV-1392128_31	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-1392128_32	PHROG	phrog_37604	NA	unknown function
UHGV-1392128_32	eggNOG-mapper	1123075.AUDP01000020_gene1531	NA	NA
UHGV-1392128_33	PHROG	phrog_32444	NA	unknown function
UHGV-1392128_33	eggNOG-mapper	478749.BRYFOR_08525	NA	NA
UHGV-1392128_35	Structural annotation	PF10743, TIGR01764, COG3311	NA	NA