UHGV-1392333

Genome information

vOTU vOTU-019030

Genome length 40,528 bps

CDS count 52

Completeness 80.71% (medium-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-1392333
vOTU ID	vOTU-019030
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0271253
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.46
Jumbo phage	No

Genome content
Genome length	40,528 bps
GC content	51.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.04%
Average CDS length	706.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1392333_12	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1392333_12	UniRef90	UniRef90_A0A2T5L7K2	ERF superfamily protein	NA
UHGV-1392333_12	eggNOG-mapper	1622193.A0A0E3T692_9CAUD	ERF superfamily	NA
UHGV-1392333_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-1392333_13	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1392333_13	UniRef90	UniRef90_A0A7X9QA29	NA	NA
UHGV-1392333_13	eggNOG-mapper	1348662.CARG_02500	Transcriptional regulator	NA
UHGV-1392333_13	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-1392333_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1392333_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1392333_15	UniRef90	UniRef90_A0A496MUW9	Single-stranded DNA-binding protein	NA
UHGV-1392333_15	eggNOG-mapper	1125779.HMPREF1219_00144	Single-strand binding protein family	NA
UHGV-1392333_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1392333_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1392333_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1392333_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1392333_15	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1392333_16	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-1392333_16	PHROG	phrog_22	thioredoxin domain	DNA, RNA and nucleotide metabolism
UHGV-1392333_16	UniRef90	UniRef90_A0A496MV44	Glutaredoxin domain-containing protein	NA
UHGV-1392333_16	eggNOG-mapper	1437610.BREU_2030	Glutaredoxin	NA
UHGV-1392333_16	Pfam	PF00462	Glutaredoxin	Glutaredoxin
UHGV-1392333_16	COG	COG0695	Glutaredoxin	NA
UHGV-1392333_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1392333_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1392333_17	UniRef90	UniRef90_A0A496MXG6	DNA helicase	NA
UHGV-1392333_17	eggNOG-mapper	504474.cu1984	Participates in initiation and elongation during chromosome replication	NA
UHGV-1392333_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1392333_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1392333_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-1392333_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1392333_19	PHROG	phrog_284	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1392333_19	UniRef90	UniRef90_A0A364VE55	Metallophos domain-containing protein	NA
UHGV-1392333_19	eggNOG-mapper	247156.NFA_39310	NA	NA
UHGV-1392333_19	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-1392333_20	eggNOG-mapper	861047.E0YPM5_9CAUD	NA	NA
UHGV-1392333_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1392333_21	PHROG	phrog_3055	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1392333_21	UniRef90	UniRef90_A0A496MUZ6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1392333_21	eggNOG-mapper	1121370.AQUY01000001_gene998	Endodeoxyribonuclease RusA	NA
UHGV-1392333_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1392333_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1392333_21	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1392333_23	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1392333_23	UniRef90	UniRef90_A0A1H0U463	AAA domain-containing protein	NA
UHGV-1392333_23	eggNOG-mapper	1463921.JODF01000003_gene2346	HNH endonuclease	NA
UHGV-1392333_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1392333_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1392333_25	UniRef90	UniRef90_A0A376CY46	Putative phage associated protein	NA
UHGV-1392333_25	eggNOG-mapper	1077144.AGFF01000024_gene246	Terminase	NA
UHGV-1392333_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1392333_25	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-1392333_26	PHROG	phrog_113	portal protein	head and packaging
UHGV-1392333_26	UniRef90	UniRef90_UPI00124BFCD7	NA	NA
UHGV-1392333_26	eggNOG-mapper	1125779.HMPREF1219_00155	Mu-like prophage protein gp29	NA
UHGV-1392333_26	COG	COG4383	NA	NA
UHGV-1392333_26	Structural annotation	PF06074, MF_04135, TIGR01537, COG4383	NA	NA
UHGV-1392333_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1392333_27	PHROG	phrog_2976	head maturation protease	head and packaging
UHGV-1392333_27	UniRef90	UniRef90_A0A4U6QN38	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1392333_27	eggNOG-mapper	1121924.ATWH01000012_gene1134	Serine dehydrogenase proteinase	NA
UHGV-1392333_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1392333_27	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-1392333_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1392333_27	Structural annotation	PF00574, MF_00444, NF009205, COG0740	NA	NA
UHGV-1392333_28	PHROG	phrog_20430	NA	unknown function
UHGV-1392333_28	eggNOG-mapper	1121356.AQUW01000015_gene2176	NA	NA
UHGV-1392333_29	PHROG	phrog_1650	major head protein	head and packaging
UHGV-1392333_29	UniRef90	UniRef90_A0A1B3AYV7	Major capsid protein	NA
UHGV-1392333_29	eggNOG-mapper	1121356.AQUW01000015_gene2177	NA	NA
UHGV-1392333_29	Structural annotation	PF05065, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1392333_30	PHROG	phrog_2322	head-tail connector protein	connector
UHGV-1392333_30	eggNOG-mapper	196164.23492683	NA	NA
UHGV-1392333_31	UniRef90	UniRef90_UPI000EF9FE42	Gp19/Gp15/Gp42 family protein	NA
UHGV-1392333_31	eggNOG-mapper	1125779.HMPREF1219_00160	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1392333_31	Pfam	PF09355	NA	Phage_Gp19
UHGV-1392333_32	eggNOG-mapper	1125779.HMPREF1219_00161	NA	NA
UHGV-1392333_33	PHROG	phrog_8079	neck protein	connector
UHGV-1392333_33	eggNOG-mapper	1121370.AQUY01000001_gene982	NA	NA
UHGV-1392333_34	eggNOG-mapper	1125779.HMPREF1219_00163	NA	NA
UHGV-1392333_35	PHROG	phrog_10909	major tail protein	tail
UHGV-1392333_35	eggNOG-mapper	1125779.HMPREF1219_00164	NA	NA
UHGV-1392333_37	PHROG	phrog_24583	NA	unknown function
UHGV-1392333_37	UniRef90	UniRef90_A0A6I8MBJ8	Cell envelope integrity protein TolA	NA
UHGV-1392333_37	eggNOG-mapper	945712.CULC22_01168	NA	NA
UHGV-1392333_38	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1392333_38	PHROG	phrog_8927	tail length tape measure protein	tail
UHGV-1392333_38	UniRef90	UniRef90_A0A496MV64	Phage tail tape measure protein	NA
UHGV-1392333_38	eggNOG-mapper	1121356.AQUW01000011_gene788	Phage tail tape measure protein, TP901 family	NA
UHGV-1392333_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1392333_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1392333_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1392333_41	PHROG	phrog_16996	NA	unknown function
UHGV-1392333_41	Structural annotation	PF14594, TIGR02126, COG4379	NA	NA
UHGV-1392333_42	PHROG	phrog_20692	NA	unknown function
UHGV-1392333_42	eggNOG-mapper	945712.CULC22_01935	NA	NA
UHGV-1392333_43	PHROG	phrog_700	endolysin	lysis
UHGV-1392333_43	UniRef90	UniRef90_A0A496MV36	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1392333_43	eggNOG-mapper	1077144.AGFF01000007_gene2044	NA	NA
UHGV-1392333_43	Pfam	PF08924	Rv2525c-like, glycoside hydrolase-like domain	Rv2525c_GlyHyd-like
UHGV-1392333_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1392333_43	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1392333_43	Structural annotation	PF08924, PF01510, MF_04111, MF_00606, NF008758, TIGR01361, COG3023, COG2876	NA	NA
UHGV-1392333_44	PHROG	phrog_3428	holin	lysis
UHGV-1392333_44	UniRef90	UniRef90_A0A6M3SWT3	Holin	NA
UHGV-1392333_46	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1392333_46	UniRef90	UniRef90_A0A496MWK3	YqaJ domain-containing protein	NA
UHGV-1392333_46	eggNOG-mapper	1121924.ATWH01000012_gene1168	YqaJ-like viral recombinase domain	NA
UHGV-1392333_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ