UHGV-1392353

Genome information

Genome length 30,344 bps

CDS count 53

Completeness 74.03% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-1392353
vOTU ID	vOTU-034202
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0213277
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.81
Jumbo phage	No

Genome content
Genome length	30,344 bps
GC content	54.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.36%
Average CDS length	526.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1392353_1	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1392353_2	PHROG	phrog_28802	NA	unknown function
UHGV-1392353_3	PHROG	phrog_20016	NA	unknown function
UHGV-1392353_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1392353_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1392353_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1392353_4	PHROG	phrog_16490	NA	unknown function
UHGV-1392353_4	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-1392353_5	PHROG	phrog_22984	NA	unknown function
UHGV-1392353_6	PHROG	phrog_21718	NA	unknown function
UHGV-1392353_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1392353_7	PHROG	phrog_3754	NA	unknown function
UHGV-1392353_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1392353_10	PHROG	phrog_4105	NA	unknown function
UHGV-1392353_10	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-1392353_11	PHROG	phrog_1129	holin	lysis
UHGV-1392353_11	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-1392353_11	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1392353_11	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1392353_11	Structural annotation	PF06946	NA	NA
UHGV-1392353_12	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1392353_12	PHROG	phrog_18955	NA	unknown function
UHGV-1392353_12	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-1392353_12	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-1392353_12	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-1392353_12	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1392353_12	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1392353_12	Structural annotation	PF09992, PF01510, PF18342, NF008758, NF040678, COG5632, COG4632, COG4991	NA	NA
UHGV-1392353_13	eggNOG-mapper	742738.HMPREF9460_03967	NA	NA
UHGV-1392353_15	PHROG	phrog_2310	NA	unknown function
UHGV-1392353_16	PHROG	phrog_22773	NA	unknown function
UHGV-1392353_16	eggNOG-mapper	742738.HMPREF9460_03965	NA	NA
UHGV-1392353_17	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1392353_17	Structural annotation	PF21722	NA	NA
UHGV-1392353_18	PHROG	phrog_11157	NA	unknown function
UHGV-1392353_18	UniRef90	UniRef90_G9YSD2	Big_13 domain-containing protein	NA
UHGV-1392353_18	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-1392353_18	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1392353_18	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1392353_18	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1392353_18	Structural annotation	PF09136, PF13750, MF_04116, NF032891, COG2372	NA	NA
UHGV-1392353_20	PHROG	phrog_13879	NA	unknown function
UHGV-1392353_20	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-1392353_20	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-1392353_21	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-1392353_21	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1392353_22	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1392353_22	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-1392353_22	COG	COG1511	NA	NA
UHGV-1392353_22	Structural annotation	PF20155	NA	NA
UHGV-1392353_24	PHROG	phrog_18646	NA	unknown function
UHGV-1392353_24	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-1392353_25	PHROG	phrog_885	major tail protein	tail
UHGV-1392353_25	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1392353_25	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1392353_26	PHROG	phrog_17405	head protein	head and packaging
UHGV-1392353_26	Structural annotation	PF11367	NA	NA
UHGV-1392353_27	PHROG	phrog_1233	NA	unknown function
UHGV-1392353_27	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-1392353_27	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-1392353_28	PHROG	phrog_17977	NA	unknown function
UHGV-1392353_28	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1392353_28	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1392353_30	PHROG	phrog_544	major head protein	head and packaging
UHGV-1392353_30	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1392353_30	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-1392353_30	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1392353_30	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1392353_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1392353_31	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1392353_31	Structural annotation	PF06810	NA	NA
UHGV-1392353_32	Pfam	PF08681	NA	DUF1778
UHGV-1392353_32	Structural annotation	PF03869, NF010256	NA	NA
UHGV-1392353_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1392353_36	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-1392353_36	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-1392353_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1392353_36	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1392353_36	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1392353_37	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1392353_37	UniRef90	UniRef90_A0A1C7FSE6	Phage_Mu_F domain-containing protein	NA
UHGV-1392353_37	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1392353_37	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1392353_37	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1392353_37	COG	COG2369	NA	NA
UHGV-1392353_37	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1392353_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-1392353_38	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1392353_38	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1392353_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1392353_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1392353_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1392353_39	PHROG	phrog_10250	NA	unknown function
UHGV-1392353_39	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-1392353_39	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-1392353_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1392353_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1392353_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-1392353_39	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1392353_40	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-1392353_40	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-1392353_40	Structural annotation	PF13542	NA	NA
UHGV-1392353_41	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1392353_41	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1392353_41	UniRef90	UniRef90_A0A1Y3ZK49	Phage repressor protein/antirepressor Ant	NA
UHGV-1392353_41	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-1392353_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1392353_41	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1392353_41	COG	COG3617	Prophage antirepressor	NA
UHGV-1392353_41	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1392353_42	PHROG	phrog_924	NA	unknown function
UHGV-1392353_42	UniRef90	UniRef90_U2BA60	NA	NA
UHGV-1392353_42	Pfam	PF04448	NA	DUF551
UHGV-1392353_42	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1392353_42	Structural annotation	NF041588	NA	NA
UHGV-1392353_43	PHROG	phrog_24517	NA	unknown function
UHGV-1392353_43	Structural annotation	TIGR03666	NA	NA
UHGV-1392353_46	PHROG	phrog_22543	NA	unknown function
UHGV-1392353_48	PHROG	phrog_38832	NA	unknown function
UHGV-1392353_48	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1392353_50	Structural annotation	NF000937	NA	NA
UHGV-1392353_51	PHROG	phrog_25732	NA	unknown function
UHGV-1392353_52	PHROG	phrog_10714	NA	unknown function
UHGV-1392353_52	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-1392353_52	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-1392353_53	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1392353_53	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1392353_53	UniRef90	UniRef90_A0A174E7S0	Methyltransferase	NA
UHGV-1392353_53	eggNOG-mapper	479437.Elen_2608	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1392353_53	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-1392353_53	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1392353_53	COG	COG0863	DNA modification methylase	NA
UHGV-1392353_53	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA