UHGV-1392578

Genome information

Genome length 17,105 bps

CDS count 21

Completeness 76.85% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-1392578
vOTU ID	vOTU-034208
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0118366
BioSample	SAMEA2581909
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.71
Jumbo phage	No

Genome content
Genome length	17,105 bps
GC content	33.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	86.18%
Average CDS length	704.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1392578_1	Structural annotation	TIGR02436	NA	NA
UHGV-1392578_4	PHROG	phrog_2150	terminase	head and packaging
UHGV-1392578_4	UniRef90	UniRef90_UPI0009B42C61	phage DNA encapsidation protein	NA
UHGV-1392578_4	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1392578_4	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1392578_4	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1392578_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1392578_5	PHROG	phrog_7698	endolysin	lysis
UHGV-1392578_5	UniRef90	UniRef90_A0A413UF85	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1392578_5	eggNOG-mapper	1033733.CAEK01000007_gene1632	Bacterial SH3 domain	NA
UHGV-1392578_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1392578_5	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-1392578_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1392578_5	Structural annotation	PF01510, PF18342, PF08239, MF_04111, NF040670, NF008758, COG5632	NA	NA
UHGV-1392578_7	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1392578_7	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-1392578_8	PHROG	phrog_2038	upper collar connector	connector
UHGV-1392578_8	UniRef90	UniRef90_A0A5Q2WB79	Upper collar protein	NA
UHGV-1392578_8	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-1392578_8	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1392578_8	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1392578_9	PHROG	phrog_2248	tail protein	tail
UHGV-1392578_9	UniRef90	UniRef90_A0A7T7ZAI8	Tail knob protein	NA
UHGV-1392578_9	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-1392578_9	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1392578_9	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1392578_9	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1392578_10	PHROG	phrog_11037	NA	unknown function
UHGV-1392578_10	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-1392578_10	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1392578_10	COG	COG3942	Surface antigen	NA
UHGV-1392578_10	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-1392578_12	PHROG	phrog_6465	tail protein	tail
UHGV-1392578_12	eggNOG-mapper	1235796.C815_00905	NA	NA
UHGV-1392578_13	PHROG	phrog_199	holin	lysis
UHGV-1392578_13	UniRef90	UniRef90_A0A843HKJ8	Phage holin family protein	NA
UHGV-1392578_13	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-1392578_13	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1392578_13	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1392578_14	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1392578_14	UniRef90	UniRef90_Q37888	Major capsid protein	NA
UHGV-1392578_14	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-1392578_14	Structural annotation	PF19821, PF18957, MF_04119, TIGR04387, NF038186, COG4834	NA	NA
UHGV-1392578_15	Pfam	PF11418	Phi29 scaffolding protein	Scaffolding_pro
UHGV-1392578_18	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1392578_18	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1392578_18	UniRef90	UniRef90_B7SSM2	DNA polymerase	NA
UHGV-1392578_18	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-1392578_18	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1392578_18	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1392578_19	Structural annotation	PF05435	NA	NA
UHGV-1392578_20	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1392578_20	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-1392578_20	Structural annotation	PF17427	NA	NA