UHGV-1392672

Genome information

vOTU vOTU-022020

Genome length 38,796 bps

CDS count 66

Completeness 67.30% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-1392672
vOTU ID	vOTU-022020
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0261944
BioSample	SAMN06110267
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.43
Jumbo phage	No

Genome content
Genome length	38,796 bps
GC content	48.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.15%
Average CDS length	527.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1392672_1	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1392672_1	UniRef90	UniRef90_B0NH38	Replication initiator protein A domain protein	NA
UHGV-1392672_1	eggNOG-mapper	411468.CLOSCI_02792	Replication initiator protein A (RepA) N-terminus	NA
UHGV-1392672_1	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1392672_1	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-1392672_1	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-1392672_2	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1392672_2	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1392672_2	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-1392672_2	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-1392672_2	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1392672_2	COG	COG0305	Replicative DNA helicase	NA
UHGV-1392672_2	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1392672_3	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1392672_3	Pfam	PF19808	NA	DUF6291
UHGV-1392672_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1392672_3	Structural annotation	PF19808	NA	NA
UHGV-1392672_4	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1392672_4	eggNOG-mapper	269482.Bcep1808_1151	NA	NA
UHGV-1392672_4	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1392672_4	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1392672_4	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1392672_4	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1392672_6	UniRef90	UniRef90_A0A413HUB9	NA	NA
UHGV-1392672_8	PHROG	phrog_11947	NA	unknown function
UHGV-1392672_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1392672_8	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-1392672_12	PHROG	phrog_30878	NA	unknown function
UHGV-1392672_13	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-1392672_13	eggNOG-mapper	1121333.JMLH01000037_gene2007	restriction endonuclease	NA
UHGV-1392672_13	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-1392672_13	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-1392672_14	Structural annotation	PF16677	NA	NA
UHGV-1392672_20	Structural annotation	PF11998, COG5420	NA	NA
UHGV-1392672_22	PHROG	phrog_30930	NA	unknown function
UHGV-1392672_22	eggNOG-mapper	1214184.ALKY01000039_gene933	NA	NA
UHGV-1392672_22	Structural annotation	PF05037	NA	NA
UHGV-1392672_23	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1392672_23	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-1392672_23	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1392672_23	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1392672_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1392672_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1392672_26	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1392672_26	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1392672_26	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1392672_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1392672_26	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1392672_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1392672_26	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-1392672_27	PHROG	phrog_4572	NA	unknown function
UHGV-1392672_27	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-1392672_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1392672_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1392672_28	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-1392672_28	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1392672_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1392672_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1392672_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1392672_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1392672_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1392672_29	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1392672_29	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-1392672_29	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-1392672_29	Pfam	PF04404	ERF superfamily	ERF
UHGV-1392672_29	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1392672_31	Structural annotation	PF14143	NA	NA
UHGV-1392672_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1392672_32	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-1392672_34	Structural annotation	TIGR03826	NA	NA
UHGV-1392672_36	Structural annotation	PF10922	NA	NA
UHGV-1392672_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1392672_37	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1392672_37	UniRef90	UniRef90_R5ANG2	Phage antirepressor protein	NA
UHGV-1392672_37	eggNOG-mapper	1589751.A0A0C5AEJ9_9CAUD	DNA binding	NA
UHGV-1392672_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1392672_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1392672_37	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1392672_38	UniRef90	UniRef90_A0A7X1LWA7	XRE family transcriptional regulator	NA
UHGV-1392672_38	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-1392672_38	Structural annotation	TIGR03070	NA	NA
UHGV-1392672_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1392672_39	UniRef90	UniRef90_A0A373XY93	XRE family transcriptional regulator	NA
UHGV-1392672_39	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1392672_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1392672_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1392672_43	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-1392672_43	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1392672_44	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1392672_44	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-1392672_44	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-1392672_44	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-1392672_44	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-1392672_44	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1392672_44	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-1392672_45	PHROG	phrog_924	NA	unknown function
UHGV-1392672_45	UniRef90	UniRef90_A0A7X7H6I7	NA	NA
UHGV-1392672_45	Pfam	PF04448	NA	DUF551
UHGV-1392672_45	Structural annotation	NF041588	NA	NA
UHGV-1392672_46	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1392672_46	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1392672_46	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-1392672_46	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-1392672_46	Pfam	PF13614	AAA domain	AAA_31
UHGV-1392672_46	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1392672_46	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1392672_48	Structural annotation	PF07878	NA	NA
UHGV-1392672_49	UniRef90	UniRef90_UPI0009300B98	CopG family transcriptional regulator	NA
UHGV-1392672_49	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-1392672_49	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1392672_50	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1392672_50	UniRef90	UniRef90_A0A161P7Y2	Phage antirepressor	NA
UHGV-1392672_50	eggNOG-mapper	1122146.AUHP01000010_gene1045	BRO family, N-terminal domain	NA
UHGV-1392672_50	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1392672_50	COG	COG3617	Prophage antirepressor	NA
UHGV-1392672_50	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-1392672_51	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1392672_52	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1392672_53	PHROG	phrog_16490	NA	unknown function
UHGV-1392672_53	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1392672_57	PHROG	phrog_15303	NA	unknown function
UHGV-1392672_58	PHROG	phrog_1863	NA	unknown function
UHGV-1392672_58	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-1392672_59	KOfam	K07273	acm; lysozyme	NA
UHGV-1392672_59	PHROG	phrog_291	endolysin	lysis
UHGV-1392672_59	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-1392672_59	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-1392672_59	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1392672_59	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1392672_59	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1392672_62	PHROG	phrog_6616	tail protein	tail
UHGV-1392672_62	eggNOG-mapper	445971.ANASTE_00088	NA	NA
UHGV-1392672_62	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1392672_63	PHROG	phrog_1194	NA	unknown function
UHGV-1392672_63	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-1392672_63	Pfam	PF20458	NA	DUF6711
UHGV-1392672_63	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-1392672_64	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1392672_64	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1392672_64	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1392672_65	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1392672_66	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-1392672_66	Pfam	PF16478	NA	DUF5055
UHGV-1392672_66	Structural annotation	PF16478	NA	NA