UHGV-1393004

Genome information

Genome length 19,246 bps

CDS count 29

Completeness 57.86% (medium-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-1393004
vOTU ID	vOTU-032663
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0139676
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	4.93
Jumbo phage	No

Genome content
Genome length	19,246 bps
GC content	51.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	94.51%
Average CDS length	633.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1393004_1	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1393004_1	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1393004_1	UniRef90	UniRef90_A0A645G1Q9	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1393004_1	eggNOG-mapper	1160721.RBI_I00107	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1393004_1	Pfam	PF00692	dUTPase	dUTPase
UHGV-1393004_1	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1393004_1	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1393004_2	eggNOG-mapper	1357732.A0A059PYA6_9CAUD	NA	NA
UHGV-1393004_2	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1393004_2	Structural annotation	PF18909	NA	NA
UHGV-1393004_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1393004_5	UniRef90	UniRef90_A0A1I0FCM6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-1393004_5	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1393004_7	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-1393004_7	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1393004_7	UniRef90	UniRef90_A0A3P2ANM5	Putative mRNA interferase YoeB	NA
UHGV-1393004_7	eggNOG-mapper	411483.FAEPRAA2165_00750	YoeB-like toxin of bacterial type II toxin-antitoxin system	NA
UHGV-1393004_7	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-1393004_7	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-1393004_7	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-1393004_7	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-1393004_8	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-1393004_8	PHROG	phrog_2737	NA	unknown function
UHGV-1393004_8	UniRef90	UniRef90_UPI001C527681	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-1393004_8	eggNOG-mapper	411483.FAEPRAA2165_00751	Addiction module antitoxin, RelB DinJ family	NA
UHGV-1393004_8	Pfam	PF04221	RelB antitoxin	RelB
UHGV-1393004_8	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-1393004_8	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-1393004_8	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-1393004_9	UniRef90	UniRef90_A7VTB3	Helix-turn-helix domain-containing protein	NA
UHGV-1393004_9	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-1393004_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1393004_10	PHROG	phrog_29775	NA	unknown function
UHGV-1393004_10	UniRef90	UniRef90_A0A316T8R1	PBSX family phage terminase large subunit	NA
UHGV-1393004_10	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-1393004_10	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1393004_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1393004_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-1393004_10	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1393004_11	PHROG	phrog_533	portal protein	head and packaging
UHGV-1393004_11	UniRef90	UniRef90_A7VTB1	Phage minor capsid protein	NA
UHGV-1393004_11	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-1393004_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1393004_11	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1393004_11	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1393004_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1393004_12	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-1393004_12	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-1393004_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1393004_12	COG	COG2369	NA	NA
UHGV-1393004_12	Structural annotation	PF06152	NA	NA
UHGV-1393004_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-1393004_17	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-1393004_17	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-1393004_17	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1393004_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1393004_18	eggNOG-mapper	1161901.I1TLE4_9CAUD	NA	NA
UHGV-1393004_19	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-1393004_19	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1393004_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1393004_20	UniRef90	UniRef90_UPI000C857E2C	minor capsid protein	NA
UHGV-1393004_20	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-1393004_20	Structural annotation	PF11114	NA	NA
UHGV-1393004_21	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1393004_21	Structural annotation	PF12691	NA	NA
UHGV-1393004_22	PHROG	phrog_820	major tail protein	tail
UHGV-1393004_22	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-1393004_22	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-1393004_22	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1393004_22	COG	COG5492	NA	NA
UHGV-1393004_22	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-1393004_23	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-1393004_23	Structural annotation	PF10666	NA	NA
UHGV-1393004_24	PHROG	phrog_706	NA	unknown function
UHGV-1393004_24	UniRef90	UniRef90_UPI000E52BFC1	Gp15 family bacteriophage protein	NA
UHGV-1393004_24	eggNOG-mapper	935836.JAEL01000086_gene44	Bacteriophage Gp15 protein	NA
UHGV-1393004_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1393004_24	Structural annotation	PF06854	NA	NA
UHGV-1393004_25	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1393004_25	UniRef90	UniRef90_UPI000E4708D5	phage tail tape measure protein	NA
UHGV-1393004_25	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-1393004_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1393004_25	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1393004_25	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1393004_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1393004_26	UniRef90	UniRef90_A0A1C6G0J5	Phage tail protein	NA
UHGV-1393004_26	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-1393004_27	PHROG	phrog_5555	tail protein	tail
UHGV-1393004_27	UniRef90	UniRef90_A0A3A6ECU0	Prophage_tail domain-containing protein	NA
UHGV-1393004_27	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-1393004_27	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1393004_27	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1393004_27	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1393004_27	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-1393004_29	PHROG	phrog_2649	endolysin	lysis
UHGV-1393004_29	UniRef90	UniRef90_A0A6P0XXU7	Peptidoglycan-binding protein	NA
UHGV-1393004_29	eggNOG-mapper	66869.JNXG01000005_gene2297	Ami_2	NA
UHGV-1393004_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1393004_29	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA