UHGV-1393889

Genome information

Genome length 32,744 bps

CDS count 56

Completeness 80.27% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-1393889
vOTU ID	vOTU-024892
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0226982
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.41
Jumbo phage	No

Genome content
Genome length	32,744 bps
GC content	52.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.45%
Average CDS length	529.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1393889_1	COG	COG5283	Phage-related tail protein	NA
UHGV-1393889_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1393889_2	UniRef90	UniRef90_UPI00084D54FA	phage tail family protein	NA
UHGV-1393889_2	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-1393889_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1393889_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-1393889_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1393889_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1393889_3	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-1393889_3	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1393889_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1393889_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1393889_3	COG	COG4926	Phage-related protein	NA
UHGV-1393889_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1393889_5	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1393889_5	eggNOG-mapper	999411.HMPREF1092_03093	lipolytic protein G-D-S-L family	NA
UHGV-1393889_5	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1393889_6	KOfam	K07273	acm; lysozyme	NA
UHGV-1393889_6	PHROG	phrog_291	endolysin	lysis
UHGV-1393889_6	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-1393889_6	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-1393889_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1393889_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1393889_6	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1393889_8	PHROG	phrog_15303	NA	unknown function
UHGV-1393889_10	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-1393889_11	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-1393889_11	Structural annotation	PF13560, NF040522	NA	NA
UHGV-1393889_16	PHROG	phrog_16490	NA	unknown function
UHGV-1393889_16	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1393889_17	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1393889_19	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1393889_20	KOfam	K14059	int; integrase	NA
UHGV-1393889_20	PHROG	phrog_1	integrase	integration and excision
UHGV-1393889_20	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-1393889_20	eggNOG-mapper	1298920.KI911353_gene4877	Belongs to the 'phage' integrase family	NA
UHGV-1393889_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1393889_20	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1393889_20	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1393889_21	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1393889_21	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1393889_21	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-1393889_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1393889_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1393889_21	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1393889_24	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1393889_24	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1393889_24	UniRef90	UniRef90_UPI001EE95DBE	3'-5' exoribonuclease	NA
UHGV-1393889_24	eggNOG-mapper	665956.HMPREF1032_02791	NA	NA
UHGV-1393889_24	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1393889_24	Pfam	PF17370	NA	DUF5392
UHGV-1393889_24	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1393889_24	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-1393889_24	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-1393889_24	Structural annotation	PF13361, PF00533, MF_00157, NF008746, COG2925	NA	NA
UHGV-1393889_28	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-1393889_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1393889_29	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-1393889_29	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-1393889_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1393889_29	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1393889_30	UniRef90	UniRef90_UPI000BEF0F65	helix-turn-helix transcriptional regulator	NA
UHGV-1393889_30	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-1393889_33	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1393889_33	PHROG	phrog_1	integrase	integration and excision
UHGV-1393889_33	UniRef90	UniRef90_A0A3M0A1F4	Site-specific recombinase XerD	NA
UHGV-1393889_33	eggNOG-mapper	484018.BACPLE_03294	Belongs to the 'phage' integrase family	NA
UHGV-1393889_33	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1393889_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1393889_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1393889_33	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-1393889_41	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1393889_41	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1393889_42	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1393889_42	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-1393889_42	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1393889_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1393889_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1393889_43	UniRef90	UniRef90_UPI0006798E95	helix-turn-helix domain-containing protein	NA
UHGV-1393889_43	eggNOG-mapper	877414.ATWA01000093_gene1925	Helix-turn-helix XRE-family like proteins	NA
UHGV-1393889_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1393889_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1393889_45	PHROG	phrog_7566	NA	unknown function
UHGV-1393889_45	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-1393889_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1393889_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1393889_46	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-1393889_46	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-1393889_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1393889_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1393889_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1393889_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1393889_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1393889_47	eggNOG-mapper	869209.Tresu_2711	DnaD domain protein	NA
UHGV-1393889_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1393889_47	Structural annotation	PF04182, MF_01819, TIGR04176, COG5625	NA	NA
UHGV-1393889_48	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1393889_48	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1393889_48	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-1393889_48	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-1393889_48	Pfam	PF13614	AAA domain	AAA_31
UHGV-1393889_48	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1393889_48	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1393889_49	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1393889_49	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1393889_49	UniRef90	UniRef90_A0A2A7AMC5	ParB domain-containing protein	NA
UHGV-1393889_49	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-1393889_49	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1393889_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1393889_49	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-1393889_50	Structural annotation	PF04545	NA	NA
UHGV-1393889_51	PHROG	phrog_3136	NA	unknown function
UHGV-1393889_51	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-1393889_51	eggNOG-mapper	388467.A19Y_0909	ASCH domain	NA
UHGV-1393889_51	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1393889_51	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1393889_53	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1393889_53	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-1393889_53	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-1393889_53	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1393889_53	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1393889_54	PHROG	phrog_13845	NA	unknown function
UHGV-1393889_54	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-1393889_54	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1393889_55	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1393889_55	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-1393889_55	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-1393889_55	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1393889_55	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1393889_55	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1393889_55	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1393889_56	PHROG	phrog_12	portal protein	head and packaging
UHGV-1393889_56	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-1393889_56	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1393889_56	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1393889_56	COG	COG4695	Phage portal protein BeeE	NA