UHGV-1394381

Genome information

Genome length 32,673 bps

CDS count 46

Completeness 88.03% (medium-quality)

geNomad score 0.9663

Prediction confidence Confident

Genome information
Genome ID	UHGV-1394381
vOTU ID	vOTU-022775
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0226599
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9663
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	4.14
Jumbo phage	No

Genome content
Genome length	32,673 bps
GC content	44.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.51%
Average CDS length	675.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1394381_1	PHROG	phrog_1281	NA	unknown function
UHGV-1394381_1	UniRef90	UniRef90_A0A316QHN5	NA	NA
UHGV-1394381_1	eggNOG-mapper	428127.EUBDOL_01537	NA	NA
UHGV-1394381_1	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1394381_1	COG	COG3600	NA	NA
UHGV-1394381_1	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1394381_2	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1394381_2	UniRef90	UniRef90_A0A843DAJ2	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-1394381_2	eggNOG-mapper	428127.EUBDOL_01536	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-1394381_2	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1394381_2	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1394381_7	UniRef90	UniRef90_A0A3E2B3T2	NA	NA
UHGV-1394381_8	PHROG	phrog_11393	tail fiber protein	tail
UHGV-1394381_8	eggNOG-mapper	1064535.MELS_1932	Membrane	NA
UHGV-1394381_8	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1394381_9	PHROG	phrog_33513	NA	unknown function
UHGV-1394381_9	eggNOG-mapper	686439.D0U203_9CAUD	NA	NA
UHGV-1394381_10	Structural annotation	PF06013, MF_00683, NF003844, COG4842	NA	NA
UHGV-1394381_11	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1394381_14	Structural annotation	PF09393, PF05561, TIGR02126, COG5437	NA	NA
UHGV-1394381_16	Structural annotation	PF07405, TIGR01563	NA	NA
UHGV-1394381_18	UniRef90	UniRef90_A0A2Z4GUC0	Chitobiase/beta-hexosaminidase	NA
UHGV-1394381_18	eggNOG-mapper	335541.Swol_0141	nucleotide catabolic process	NA
UHGV-1394381_18	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-1394381_18	COG	COG0737	2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family	NA
UHGV-1394381_18	Structural annotation	PF05065, PF13620, MF_04119, TIGR04387, TIGR04134, COG4653	NA	NA
UHGV-1394381_20	UniRef90	UniRef90_UPI001922BDE8	NA	NA
UHGV-1394381_20	eggNOG-mapper	588581.Cpap_1521	NA	NA
UHGV-1394381_20	Structural annotation	PF11195	NA	NA
UHGV-1394381_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1394381_21	UniRef90	UniRef90_A0A2Z4GUI4	Minor capsid protein 2	NA
UHGV-1394381_21	eggNOG-mapper	997296.PB1_16234	Phage minor capsid protein 2	NA
UHGV-1394381_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1394381_21	COG	COG2369	NA	NA
UHGV-1394381_21	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-1394381_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-1394381_22	UniRef90	UniRef90_A0A2Z4GUT7	Portal protein	NA
UHGV-1394381_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-1394381_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1394381_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1394381_23	UniRef90	UniRef90_A0A2Z4GUK2	Terminase large subunit	NA
UHGV-1394381_23	eggNOG-mapper	762051.LKI_09665	Terminase RNAseH like domain	NA
UHGV-1394381_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1394381_23	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1394381_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1394381_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1394381_24	UniRef90	UniRef90_UPI00067F0D6E	helix-turn-helix domain containing protein	NA
UHGV-1394381_24	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-1394381_24	Pfam	PF08279	HTH domain	HTH_11
UHGV-1394381_24	Structural annotation	PF02796, NF040785	NA	NA
UHGV-1394381_25	PHROG	phrog_34144	NA	unknown function
UHGV-1394381_25	eggNOG-mapper	908338.HMPREF9286_0178	NA	NA
UHGV-1394381_25	Structural annotation	PF20111	NA	NA
UHGV-1394381_26	eggNOG-mapper	1118057.CAGX01000020_gene1618	Phage Mu protein F like protein	NA
UHGV-1394381_26	COG	COG2369	NA	NA
UHGV-1394381_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1394381_27	Structural annotation	PF07374, MF_00674, TIGR01636	NA	NA
UHGV-1394381_31	PHROG	phrog_3136	NA	unknown function
UHGV-1394381_31	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1394381_31	eggNOG-mapper	1235792.C808_00630	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1394381_31	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1394381_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1394381_34	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1394381_34	UniRef90	UniRef90_A0A1K1KNX8	Methyltransferase	NA
UHGV-1394381_34	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-1394381_34	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1394381_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1394381_34	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1394381_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1394381_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1394381_35	UniRef90	UniRef90_A0A355V3M4	Single-stranded DNA-binding protein	NA
UHGV-1394381_35	eggNOG-mapper	768710.DesyoDRAFT_5235	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1394381_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1394381_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1394381_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1394381_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1394381_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1394381_36	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1394381_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1394381_36	UniRef90	UniRef90_F7V9D6	Putative DnaC	NA
UHGV-1394381_36	eggNOG-mapper	508419.F8J195_9CAUD	IstB-like ATP binding protein	NA
UHGV-1394381_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1394381_36	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-1394381_38	PHROG	phrog_16304	NA	unknown function
UHGV-1394381_38	eggNOG-mapper	1227266.HMPREF1551_00549	NA	NA
UHGV-1394381_38	Pfam	PF19808	NA	DUF6291
UHGV-1394381_38	Structural annotation	PF19808	NA	NA
UHGV-1394381_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1394381_39	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1394381_39	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-1394381_39	eggNOG-mapper	997350.HMPREF9129_1668	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1394381_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1394381_39	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1394381_40	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1394381_40	UniRef90	UniRef90_UPI001C7D2471	NA	NA
UHGV-1394381_40	eggNOG-mapper	411490.ANACAC_00805	NA	NA
UHGV-1394381_40	Pfam	PF06378	NA	DUF1071
UHGV-1394381_43	Structural annotation	PF06531	NA	NA
UHGV-1394381_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1394381_44	UniRef90	UniRef90_A0A2A4DTX0	Helix-turn-helix transcriptional regulator	NA
UHGV-1394381_44	eggNOG-mapper	768486.EHR_02755	Helix-turn-helix XRE-family like proteins	NA
UHGV-1394381_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1394381_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1394381_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1394381_45	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1394381_45	UniRef90	UniRef90_A0A3C2DVT6	XRE family transcriptional regulator	NA
UHGV-1394381_45	eggNOG-mapper	1151061.CAJY01000016_gene500	sequence-specific DNA binding	NA
UHGV-1394381_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1394381_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1394381_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1394381_46	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1394381_46	UniRef90	UniRef90_UPI000C24C531	NA	NA
UHGV-1394381_46	eggNOG-mapper	1238184.CM001792_gene2528	NA	NA
UHGV-1394381_46	Structural annotation	COG2250	NA	NA