UHGV-1394440

Genome information

Genome length 38,837 bps

CDS count 50

Completeness 94.11% (high-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-1394440
vOTU ID	vOTU-060340
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0262175
BioSample	SAMEA3665224
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.11% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.73
Jumbo phage	No

Genome content
Genome length	38,837 bps
GC content	53.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.43%
Average CDS length	712.56 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1394440_2	PHROG	phrog_27545	NA	unknown function
UHGV-1394440_2	UniRef90	UniRef90_A0A8D9UHK2	Chitin oligosaccharide deacetylase	NA
UHGV-1394440_2	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-1394440_2	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1394440_2	Structural annotation	PF14600	NA	NA
UHGV-1394440_3	UniRef90	UniRef90_A0A1Y3RJS2	Sigma70_r4_2 domain-containing protein	NA
UHGV-1394440_6	PHROG	phrog_21483	NA	unknown function
UHGV-1394440_6	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-1394440_7	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-1394440_7	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1394440_9	PHROG	phrog_6721	NA	unknown function
UHGV-1394440_9	eggNOG-mapper	411460.RUMTOR_01369	NA	NA
UHGV-1394440_9	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1394440_10	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1394440_10	UniRef90	UniRef90_UPI0019572D92	NA	NA
UHGV-1394440_10	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-1394440_10	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1394440_11	PHROG	phrog_474	phosphofructokinase	other
UHGV-1394440_11	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-1394440_11	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1394440_11	Pfam	PF19905	NA	DUF6378
UHGV-1394440_11	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1394440_13	Structural annotation	PF04448, NF041588	NA	NA
UHGV-1394440_15	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-1394440_15	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-1394440_15	UniRef90	UniRef90_A0A3L7S6W5	dCTP deaminase, dUMP-forming	NA
UHGV-1394440_15	eggNOG-mapper	1121335.Clst_0069	TIGRFAM deoxycytidine triphosphate deaminase	NA
UHGV-1394440_15	Pfam	PF06559	2'-deoxycytidine 5'-triphosphate deaminase (DCD)	DCD
UHGV-1394440_15	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-1394440_15	COG	COG0717	dCTP deaminase	NA
UHGV-1394440_15	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-1394440_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1394440_16	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1394440_16	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1394440_16	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-1394440_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1394440_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1394440_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1394440_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1394440_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1394440_17	UniRef90	UniRef90_UPI0018973262	AAA family ATPase	NA
UHGV-1394440_17	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-1394440_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1394440_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1394440_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-1394440_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1394440_18	PHROG	phrog_15768	NA	unknown function
UHGV-1394440_18	UniRef90	UniRef90_UPI0002D17810	helix-turn-helix domain-containing protein	NA
UHGV-1394440_18	eggNOG-mapper	1235792.C808_01789	NA	NA
UHGV-1394440_18	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1394440_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1394440_18	Structural annotation	PF04492, MF_01819, NF040939, COG3355	NA	NA
UHGV-1394440_19	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-1394440_19	Structural annotation	PF05037	NA	NA
UHGV-1394440_21	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1394440_21	UniRef90	UniRef90_A0A8J6P193	AAA family ATPase	NA
UHGV-1394440_21	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-1394440_21	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1394440_25	Structural annotation	PF19157	NA	NA
UHGV-1394440_28	PHROG	phrog_14556	NA	unknown function
UHGV-1394440_28	eggNOG-mapper	203119.Cthe_2752	Metallo-beta-lactamase domain protein	NA
UHGV-1394440_28	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-1394440_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1394440_29	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1394440_29	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-1394440_29	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-1394440_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1394440_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1394440_29	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1394440_30	UniRef90	UniRef90_UPI000B8B6894	helix-turn-helix domain-containing protein	NA
UHGV-1394440_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1394440_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1394440_31	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1394440_31	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1394440_31	UniRef90	UniRef90_UPI000E31F980	helix-turn-helix domain-containing protein	NA
UHGV-1394440_31	eggNOG-mapper	1203602.HMPREF1527_01116	Peptidase S24-like	NA
UHGV-1394440_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1394440_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1394440_31	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1394440_32	KOfam	K14059	int; integrase	NA
UHGV-1394440_32	PHROG	phrog_1	integrase	integration and excision
UHGV-1394440_32	UniRef90	UniRef90_UPI00082B31A6	tyrosine-type recombinase/integrase	NA
UHGV-1394440_32	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-1394440_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1394440_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1394440_32	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1394440_33	eggNOG-mapper	1118055.CAGU01000028_gene99	NA	NA
UHGV-1394440_34	eggNOG-mapper	999413.HMPREF1094_04343	NA	NA
UHGV-1394440_34	Structural annotation	PF18847	NA	NA
UHGV-1394440_38	Structural annotation	PF10723	NA	NA
UHGV-1394440_39	Structural annotation	PF16677	NA	NA
UHGV-1394440_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1394440_40	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1394440_40	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-1394440_40	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-1394440_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1394440_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-1394440_40	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1394440_42	PHROG	phrog_156	portal protein	head and packaging
UHGV-1394440_42	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-1394440_42	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1394440_43	PHROG	phrog_4105	NA	unknown function
UHGV-1394440_43	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-1394440_44	PHROG	phrog_443	holin	lysis
UHGV-1394440_44	UniRef90	UniRef90_UPI000F0550CB	holin	NA
UHGV-1394440_44	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-1394440_44	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1394440_44	Structural annotation	PF16945	NA	NA
UHGV-1394440_45	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1394440_45	PHROG	phrog_20388	endolysin	lysis
UHGV-1394440_45	UniRef90	UniRef90_R5HQL6	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1394440_45	eggNOG-mapper	1226322.HMPREF1545_04024	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1394440_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1394440_45	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1394440_45	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1394440_47	PHROG	phrog_422	major head protein	head and packaging
UHGV-1394440_47	UniRef90	UniRef90_A0A8J6JH37	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-1394440_47	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-1394440_47	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1394440_48	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-1394440_48	Structural annotation	PF11650	NA	NA
UHGV-1394440_49	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-1394440_49	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-1394440_49	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-1394440_50	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1394440_50	PHROG	phrog_819	tail protein	tail
UHGV-1394440_50	UniRef90	UniRef90_A0A417HW08	Collagen-like protein	NA
UHGV-1394440_50	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen