UHGV-1394474

Genome information

vOTU vOTU-019842

Genome length 17,952 bps

CDS count 25

Completeness 53.26% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-1394474
vOTU ID	vOTU-019842
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0127504
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.43
Jumbo phage	No

Genome content
Genome length	17,952 bps
GC content	28.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	93.99%
Average CDS length	679.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1394474_1	eggNOG-mapper	1033737.CAEV01000097_gene1816	NA	NA
UHGV-1394474_4	PHROG	phrog_2232	NA	unknown function
UHGV-1394474_4	UniRef90	UniRef90_UPI00189720E3	NA	NA
UHGV-1394474_4	eggNOG-mapper	1121930.AQXG01000001_gene1416	NA	NA
UHGV-1394474_4	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-1394474_4	COG	COG5470	NA	NA
UHGV-1394474_4	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-1394474_5	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-1394474_6	Structural annotation	PF13157, MF_01372, NF040827, COG3542	NA	NA
UHGV-1394474_7	PHROG	phrog_3558	tail protein	tail
UHGV-1394474_7	UniRef90	UniRef90_UPI0004B53C32	phage tail protein	NA
UHGV-1394474_7	eggNOG-mapper	1414720.CBYM010000040_gene1657	Phage minor structural protein, N-terminal	NA
UHGV-1394474_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1394474_7	COG	COG4926	Phage-related protein	NA
UHGV-1394474_7	Structural annotation	PF06605, PF09931, TIGR01665, COG4926	NA	NA
UHGV-1394474_8	UniRef90	UniRef90_UPI0004BC5A02	phage tail family protein	NA
UHGV-1394474_8	eggNOG-mapper	1414720.CBYM010000001_gene708	PFAM Phage tail protein	NA
UHGV-1394474_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-1394474_8	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-1394474_9	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1394474_9	UniRef90	UniRef90_B1BPR4	Putative phage protein	NA
UHGV-1394474_9	eggNOG-mapper	1414720.CBYM010000040_gene1655	tail tape measure protein	NA
UHGV-1394474_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1394474_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1394474_9	COG	COG5283	Phage-related tail protein	NA
UHGV-1394474_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1394474_10	eggNOG-mapper	1414720.CBYM010000040_gene1654	NA	NA
UHGV-1394474_11	eggNOG-mapper	1414720.CBYM010000040_gene1653	NA	NA
UHGV-1394474_12	PHROG	phrog_885	major tail protein	tail
UHGV-1394474_12	eggNOG-mapper	1414720.CBYM010000040_gene1652	NA	NA
UHGV-1394474_12	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-1394474_13	PHROG	phrog_957	head protein	head and packaging
UHGV-1394474_13	UniRef90	UniRef90_UPI0004B43D30	NA	NA
UHGV-1394474_13	eggNOG-mapper	1414720.CBYM010000040_gene1651	NA	NA
UHGV-1394474_13	Structural annotation	PF11367, COG4722	NA	NA
UHGV-1394474_14	UniRef90	UniRef90_A0A133N6J9	Phage protein, HK97 gp10 family	NA
UHGV-1394474_14	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-1394474_14	Structural annotation	TIGR01725	NA	NA
UHGV-1394474_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1394474_15	UniRef90	UniRef90_A0A133N6L3	Putative phage head-tail adaptor	NA
UHGV-1394474_15	eggNOG-mapper	931626.Awo_c35070	NA	NA
UHGV-1394474_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1394474_16	PHROG	phrog_5223	neck protein	connector
UHGV-1394474_16	UniRef90	UniRef90_A0A133N6K5	Phage DNA packaging protein	NA
UHGV-1394474_16	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-1394474_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1394474_16	Structural annotation	TIGR01560	NA	NA
UHGV-1394474_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-1394474_17	UniRef90	UniRef90_A0A3N9UIU8	Phage major capsid protein	NA
UHGV-1394474_17	eggNOG-mapper	198094.BA_3784	Phage capsid family	NA
UHGV-1394474_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1394474_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1394474_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1394474_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1394474_18	KOfam	K06904	NA	NA
UHGV-1394474_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1394474_18	UniRef90	UniRef90_A0A1S8PRR3	Caudovirus prohead protease	NA
UHGV-1394474_18	eggNOG-mapper	290402.Cbei_0908	Phage prohead protease, HK97 family	NA
UHGV-1394474_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1394474_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1394474_18	COG	COG3740	Phage head maturation protease	NA
UHGV-1394474_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1394474_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-1394474_19	UniRef90	UniRef90_UPI001EEED23C	phage portal protein	NA
UHGV-1394474_19	eggNOG-mapper	573061.Clocel_2439	Portal protein	NA
UHGV-1394474_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1394474_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1394474_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1394474_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1394474_20	UniRef90	UniRef90_UPI0018977AE9	terminase large subunit	NA
UHGV-1394474_20	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-1394474_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1394474_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1394474_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1394474_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1394474_21	PHROG	phrog_1066	NA	unknown function
UHGV-1394474_21	eggNOG-mapper	573061.Clocel_2441	NA	NA
UHGV-1394474_21	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1394474_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1394474_22	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1394474_22	UniRef90	UniRef90_UPI0018A90D59	HNH endonuclease	NA
UHGV-1394474_22	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-1394474_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1394474_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1394474_22	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1394474_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1394474_23	PHROG	phrog_216	integrase	integration and excision
UHGV-1394474_23	UniRef90	UniRef90_UPI0018992E1A	tyrosine-type recombinase/integrase	NA
UHGV-1394474_23	eggNOG-mapper	1280689.AUJC01000011_gene1512	Integrase	NA
UHGV-1394474_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1394474_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1394474_23	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1394474_24	PHROG	phrog_3928	NA	unknown function
UHGV-1394474_24	eggNOG-mapper	1414720.CBYM010000040_gene1639	NA	NA
UHGV-1394474_25	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1394474_25	UniRef90	UniRef90_UPI0018AC4BDF	nitroreductase	NA
UHGV-1394474_25	eggNOG-mapper	1443122.Z958_05945	NA	NA
UHGV-1394474_25	Structural annotation	PF08281, MF_00674, TIGR01636, COG1191	NA	NA