UHGV-1394774

Genome information

vOTU vOTU-061964

Genome length 32,634 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-1394774
vOTU ID	vOTU-061964
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0226358
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.15
Jumbo phage	No

Genome content
Genome length	32,634 bps
GC content	38.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.04%
Average CDS length	574.56 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1394774_1	PHROG	phrog_1529	NA	unknown function
UHGV-1394774_1	UniRef90	UniRef90_UPI001960B4B3	DNA-binding protein	NA
UHGV-1394774_1	eggNOG-mapper	999425.HMPREF9186_01940	NA	NA
UHGV-1394774_1	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-1394774_3	PHROG	phrog_6487	NA	unknown function
UHGV-1394774_3	UniRef90	UniRef90_A0A359YI00	NA	NA
UHGV-1394774_3	eggNOG-mapper	999425.HMPREF9186_02053	NA	NA
UHGV-1394774_3	Structural annotation	PF05587, NF040788, COG5456	NA	NA
UHGV-1394774_4	PHROG	phrog_1309	endolysin	lysis
UHGV-1394774_4	UniRef90	UniRef90_A0A7X3BPB8	SH3b domain-containing protein	NA
UHGV-1394774_4	eggNOG-mapper	428127.EUBDOL_01204	hydrolase, family 25	NA
UHGV-1394774_4	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-1394774_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1394774_4	Structural annotation	PF08460, PF05257, NF041850, COG3942	NA	NA
UHGV-1394774_5	PHROG	phrog_608	holin	lysis
UHGV-1394774_5	UniRef90	UniRef90_A0A7X3BPC8	Phage holin	NA
UHGV-1394774_5	eggNOG-mapper	936580.HMPREF1516_0703	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1394774_5	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1394774_5	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-1394774_6	PHROG	phrog_199	holin	lysis
UHGV-1394774_6	UniRef90	UniRef90_A0A7X2X3Q0	Holin	NA
UHGV-1394774_6	eggNOG-mapper	1051631.F8HGP0_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-1394774_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1394774_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1394774_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1394774_7	PHROG	phrog_1554	NA	unknown function
UHGV-1394774_7	UniRef90	UniRef90_A0A4V0EM35	NA	NA
UHGV-1394774_7	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-1394774_7	Structural annotation	PF07104	NA	NA
UHGV-1394774_9	PHROG	phrog_2189	tail protein	tail
UHGV-1394774_9	UniRef90	UniRef90_T0U481	Phage endopeptidase	NA
UHGV-1394774_9	eggNOG-mapper	1316408.HSISM1_1246	Phage minor structural protein	NA
UHGV-1394774_9	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1394774_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1394774_9	COG	COG1511	NA	NA
UHGV-1394774_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1394774_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1394774_10	UniRef90	UniRef90_UPI001CC00BD7	phage tail protein	NA
UHGV-1394774_10	eggNOG-mapper	1316408.HSISM1_1245	NA	NA
UHGV-1394774_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1394774_11	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1394774_11	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1394774_11	UniRef90	UniRef90_A0A1F0KCN3	Phage tail tape measure protein	NA
UHGV-1394774_11	eggNOG-mapper	1316408.HSISM1_1244	Phage tail tape measure protein	NA
UHGV-1394774_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1394774_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1394774_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1394774_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1394774_12	PHROG	phrog_709	NA	unknown function
UHGV-1394774_12	UniRef90	UniRef90_A0A0E4CSV4	Prophage pi2 protein 40	NA
UHGV-1394774_12	eggNOG-mapper	1316408.HSISM1_1243	NA	NA
UHGV-1394774_12	Structural annotation	PF11836	NA	NA
UHGV-1394774_13	PHROG	phrog_88	major tail protein	tail
UHGV-1394774_13	UniRef90	UniRef90_T0U4F0	Phage major tail protein	NA
UHGV-1394774_13	eggNOG-mapper	1316408.HSISM1_1242	phage major tail protein, phi13 family	NA
UHGV-1394774_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1394774_13	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1394774_14	PHROG	phrog_78	tail terminator	connector
UHGV-1394774_14	UniRef90	UniRef90_T0U477	Prophage pi2 protein 38	NA
UHGV-1394774_14	eggNOG-mapper	1316408.HSISM1_1241	NA	NA
UHGV-1394774_14	Structural annotation	PF20765	NA	NA
UHGV-1394774_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1394774_15	UniRef90	UniRef90_A0A414CIF4	HK97 gp10 family phage protein	NA
UHGV-1394774_15	eggNOG-mapper	1316408.HSISM1_1058	NA	NA
UHGV-1394774_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1394774_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1394774_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1394774_16	UniRef90	UniRef90_A0A414CIH3	Phage head closure protein	NA
UHGV-1394774_16	eggNOG-mapper	1316408.HSISM1_1057	Phage head-tail joining protein	NA
UHGV-1394774_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1394774_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1394774_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1394774_17	PHROG	phrog_2550	NA	unknown function
UHGV-1394774_17	UniRef90	UniRef90_T0U4H0	Orf46	NA
UHGV-1394774_17	eggNOG-mapper	644007.C5J965_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-1394774_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1394774_18	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-1394774_18	UniRef90	UniRef90_A0A4D6A7J7	Transcriptional terminator	NA
UHGV-1394774_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-1394774_19	UniRef90	UniRef90_A0A4D6B1V9	Capsid protein	NA
UHGV-1394774_19	eggNOG-mapper	1316408.HSISM1_1054	capsid protein	NA
UHGV-1394774_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1394774_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1394774_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1394774_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1394774_20	KOfam	K06904	NA	NA
UHGV-1394774_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1394774_20	UniRef90	UniRef90_A0A414CJ71	HK97 family phage prohead protease	NA
UHGV-1394774_20	eggNOG-mapper	1316408.HSISM1_1053	Caudovirus prohead serine protease	NA
UHGV-1394774_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1394774_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1394774_20	COG	COG3740	Phage head maturation protease	NA
UHGV-1394774_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1394774_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-1394774_21	UniRef90	UniRef90_A0A4D6B580	Portal (Connector) protein	NA
UHGV-1394774_21	eggNOG-mapper	1316408.HSISM1_1052	Phage portal protein	NA
UHGV-1394774_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1394774_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1394774_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1394774_21	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1394774_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1394774_22	UniRef90	UniRef90_A0A7G1IQ86	Terminase	NA
UHGV-1394774_22	eggNOG-mapper	888049.HMPREF8578_0694	Terminase	NA
UHGV-1394774_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1394774_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1394774_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1394774_22	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1394774_23	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1394774_23	UniRef90	UniRef90_A0A414CIM9	POU-specific domain-containing protein	NA
UHGV-1394774_23	eggNOG-mapper	1316408.HSISM1_1050	Phage terminase, small subunit	NA
UHGV-1394774_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1394774_23	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1394774_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1394774_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1394774_24	UniRef90	UniRef90_A0A062WSH4	Bacteriophage nuclease	NA
UHGV-1394774_24	eggNOG-mapper	888049.HMPREF8578_0692	endonuclease activity	NA
UHGV-1394774_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1394774_25	PHROG	phrog_13581	NA	unknown function
UHGV-1394774_25	eggNOG-mapper	768726.HMPREF9178_1076	NA	NA
UHGV-1394774_26	PHROG	phrog_3606	NA	unknown function
UHGV-1394774_27	PHROG	phrog_121	NA	unknown function
UHGV-1394774_27	UniRef90	UniRef90_A0A6A8VA94	NA	NA
UHGV-1394774_27	eggNOG-mapper	768726.HMPREF9178_1077	NA	NA
UHGV-1394774_27	Pfam	PF07852	NA	DUF1642
UHGV-1394774_27	Structural annotation	PF07852	NA	NA
UHGV-1394774_28	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1394774_28	PHROG	phrog_216	integrase	integration and excision
UHGV-1394774_28	UniRef90	UniRef90_A0A4D6B299	Site-specific recombinase	NA
UHGV-1394774_28	eggNOG-mapper	644007.C5J955_9CAUD	Phage integrase family	NA
UHGV-1394774_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1394774_28	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1394774_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1394774_29	UniRef90	UniRef90_UPI001C8C424D	transcriptional regulator	NA
UHGV-1394774_29	eggNOG-mapper	1231377.C426_2205	Transcriptional regulator, RinA family	NA
UHGV-1394774_29	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1394774_29	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1394774_30	PHROG	phrog_29132	NA	unknown function
UHGV-1394774_32	PHROG	phrog_7711	NA	unknown function
UHGV-1394774_32	UniRef90	UniRef90_A0A0N7JDH6	NA	NA
UHGV-1394774_32	eggNOG-mapper	1282664.H354_07595	NA	NA
UHGV-1394774_33	PHROG	phrog_121	NA	unknown function
UHGV-1394774_33	UniRef90	UniRef90_A0A359YHY2	Putative phage protein	NA
UHGV-1394774_33	eggNOG-mapper	1282664.H354_07590	NA	NA
UHGV-1394774_33	Pfam	PF07852	NA	DUF1642
UHGV-1394774_33	Structural annotation	PF07852	NA	NA
UHGV-1394774_34	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-1394774_34	UniRef90	UniRef90_A0A1F0KA74	DNA-binding protein	NA
UHGV-1394774_34	eggNOG-mapper	999425.HMPREF9186_02016	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1394774_34	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1394774_34	Structural annotation	PF08761, MF_01020, NF007113, COG4508	NA	NA
UHGV-1394774_35	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1394774_35	UniRef90	UniRef90_A0A1F0KB48	HTH cro/C1-type domain-containing protein	NA
UHGV-1394774_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1394774_35	Structural annotation	PF01381, MF_00535, NF041575, COG3655	NA	NA
UHGV-1394774_36	PHROG	phrog_1580	NA	unknown function
UHGV-1394774_37	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1394774_37	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1394774_37	UniRef90	UniRef90_K8MKF4	DnaD and phage-associated domain-containing protein	NA
UHGV-1394774_37	eggNOG-mapper	999425.HMPREF9186_02013	Phage replisome organizer, N-terminal domain protein	NA
UHGV-1394774_37	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1394774_37	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1394774_37	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1394774_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1394774_37	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-1394774_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1394774_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1394774_38	UniRef90	UniRef90_A0A414CIJ1	Single-stranded DNA-binding protein	NA
UHGV-1394774_38	eggNOG-mapper	999425.HMPREF9186_02012	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1394774_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1394774_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1394774_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1394774_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1394774_38	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1394774_39	UniRef90	UniRef90_UPI000AB2FE25	NA	NA
UHGV-1394774_39	eggNOG-mapper	999425.HMPREF9186_02011	NA	NA
UHGV-1394774_39	Pfam	PF11753	NA	DUF3310
UHGV-1394774_43	PHROG	phrog_2317	NA	unknown function
UHGV-1394774_43	eggNOG-mapper	768726.HMPREF9178_1086	NA	NA
UHGV-1394774_44	PHROG	phrog_2211	NA	unknown function
UHGV-1394774_44	eggNOG-mapper	1122217.KB899590_gene333	NA	NA
UHGV-1394774_46	UniRef90	UniRef90_A0A359YHZ0	HTH_17 domain-containing protein	NA
UHGV-1394774_46	eggNOG-mapper	1220589.CD32_18175	NA	NA
UHGV-1394774_46	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1394774_46	Structural annotation	PF20063, TIGR01764, COG3311	NA	NA
UHGV-1394774_47	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1394774_47	UniRef90	UniRef90_A0A1X1IL01	Bro-N domain-containing protein	NA
UHGV-1394774_47	eggNOG-mapper	644007.C5J984_9CAUD	DNA binding	NA
UHGV-1394774_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1394774_47	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1394774_47	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-1394774_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1394774_48	UniRef90	UniRef90_A0A414CIJ4	Helix-turn-helix domain-containing protein	NA
UHGV-1394774_48	eggNOG-mapper	655812.HMPREF0061_0222	Helix-turn-helix XRE-family like proteins	NA
UHGV-1394774_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1394774_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1394774_48	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1394774_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1394774_49	UniRef90	UniRef90_A0A414CIM3	XRE family transcriptional regulator	NA
UHGV-1394774_49	eggNOG-mapper	999425.HMPREF9186_01999	Transcriptional regulator	NA
UHGV-1394774_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1394774_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1394774_49	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-1394774_50	PHROG	phrog_87	metallo-protease	other
UHGV-1394774_50	UniRef90	UniRef90_A0A4D6A8I2	Peptidase_M78 domain-containing protein	NA
UHGV-1394774_50	eggNOG-mapper	173707.Q938N7_9CAUD	Pfam:Peptidase_M78	NA
UHGV-1394774_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1394774_50	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1394774_51	UniRef90	UniRef90_F5VYS8	Conserved domain protein	NA
UHGV-1394774_52	KOfam	K14059	int; integrase	NA
UHGV-1394774_52	PHROG	phrog_1	integrase	integration and excision
UHGV-1394774_52	UniRef90	UniRef90_A0A4D6AWY9	Integrase	NA
UHGV-1394774_52	eggNOG-mapper	1005705.HMPREF9967_1011	Phage integrase family	NA
UHGV-1394774_52	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1394774_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1394774_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1394774_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1394774_52	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA