UHGV-1394880

Genome information

Genome length 19,300 bps

CDS count 27

Completeness 55.10% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-1394880
vOTU ID	vOTU-024899
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0140154
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.78
Jumbo phage	No

Genome content
Genome length	19,300 bps
GC content	42.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	97.11%
Average CDS length	697.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1394880_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1394880_1	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-1394880_1	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1394880_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1394880_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1394880_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1394880_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-1394880_2	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-1394880_2	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1394880_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1394880_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1394880_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1394880_3	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1394880_3	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1394880_3	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-1394880_3	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1394880_3	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1394880_3	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1394880_3	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1394880_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-1394880_4	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-1394880_4	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1394880_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1394880_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1394880_4	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1394880_4	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1394880_6	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-1394880_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1394880_7	Structural annotation	PF05657	NA	NA
UHGV-1394880_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1394880_8	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1394880_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1394880_8	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1394880_9	PHROG	phrog_88	major tail protein	tail
UHGV-1394880_9	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-1394880_9	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1394880_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1394880_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1394880_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1394880_12	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-1394880_12	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-1394880_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1394880_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1394880_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1394880_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1394880_13	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-1394880_13	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-1394880_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1394880_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-1394880_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1394880_14	PHROG	phrog_13289	tail protein	tail
UHGV-1394880_14	UniRef90	UniRef90_UPI001570BE36	phage tail protein	NA
UHGV-1394880_14	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1394880_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1394880_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1394880_14	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1394880_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1394880_15	PHROG	phrog_14030	NA	unknown function
UHGV-1394880_15	UniRef90	UniRef90_UPI0018999D57	phage tail tip lysozyme	NA
UHGV-1394880_15	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-1394880_15	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1394880_15	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1394880_15	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1394880_15	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-1394880_16	COG	COG4675	Phage tail collar domain	NA
UHGV-1394880_17	UniRef90	UniRef90_UPI00156D7781	SGNH/GDSL hydrolase family protein	NA
UHGV-1394880_17	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-1394880_19	Structural annotation	PF16323	NA	NA
UHGV-1394880_20	PHROG	phrog_15594	NA	unknown function
UHGV-1394880_20	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-1394880_20	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1394880_21	PHROG	phrog_31538	NA	unknown function
UHGV-1394880_22	PHROG	phrog_13589	NA	unknown function
UHGV-1394880_22	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1394880_23	PHROG	phrog_13589	NA	unknown function
UHGV-1394880_23	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-1394880_24	PHROG	phrog_13589	NA	unknown function
UHGV-1394880_24	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1394880_25	PHROG	phrog_4105	NA	unknown function
UHGV-1394880_25	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1394880_26	PHROG	phrog_1129	holin	lysis
UHGV-1394880_26	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-1394880_26	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1394880_26	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1394880_26	Structural annotation	PF16079	NA	NA
UHGV-1394880_27	PHROG	phrog_2742	endolysin	lysis
UHGV-1394880_27	UniRef90	UniRef90_UPI00156E4528	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1394880_27	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1394880_27	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1394880_27	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1394880_27	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA