UHGV-1395174

Genome information

Genome length 37,960 bps

CDS count 72

Completeness 99.90% (high-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-1395174
vOTU ID	vOTU-061106
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0257187
BioSample	SAMEA3541565
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.27
Jumbo phage	No

Genome content
Genome length	37,960 bps
GC content	57.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	93.52%
Average CDS length	496.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1395174_1	PHROG	phrog_1066	NA	unknown function
UHGV-1395174_1	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-1395174_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1395174_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1395174_2	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-1395174_2	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-1395174_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1395174_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1395174_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1395174_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1395174_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1395174_3	UniRef90	UniRef90_R8W4B0	HK97 family phage portal protein	NA
UHGV-1395174_3	eggNOG-mapper	1203606.HMPREF1526_00980	Portal protein	NA
UHGV-1395174_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1395174_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1395174_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1395174_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1395174_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1395174_4	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-1395174_4	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-1395174_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1395174_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1395174_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1395174_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1395174_5	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-1395174_5	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1395174_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1395174_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1395174_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1395174_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1395174_6	PHROG	phrog_5223	neck protein	connector
UHGV-1395174_6	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-1395174_6	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-1395174_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1395174_7	UniRef90	UniRef90_UPI001B02B074	phage head closure protein	NA
UHGV-1395174_7	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-1395174_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1395174_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1395174_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1395174_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1395174_8	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-1395174_8	Structural annotation	PF05657	NA	NA
UHGV-1395174_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1395174_9	Structural annotation	TIGR01725	NA	NA
UHGV-1395174_10	PHROG	phrog_88	major tail protein	tail
UHGV-1395174_10	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-1395174_10	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-1395174_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1395174_10	COG	COG5492	NA	NA
UHGV-1395174_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1395174_11	Structural annotation	PF11836	NA	NA
UHGV-1395174_13	PHROG	phrog_33680	NA	unknown function
UHGV-1395174_13	UniRef90	UniRef90_A0A2Z4I560	Phage tail protein	NA
UHGV-1395174_13	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-1395174_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1395174_13	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1395174_14	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1395174_14	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-1395174_14	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-1395174_14	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-1395174_15	PHROG	phrog_26795	NA	unknown function
UHGV-1395174_15	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-1395174_15	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-1395174_15	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1395174_16	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-1395174_17	Structural annotation	PF10651	NA	NA
UHGV-1395174_18	PHROG	phrog_19111	NA	unknown function
UHGV-1395174_18	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-1395174_18	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1395174_19	PHROG	phrog_37900	NA	unknown function
UHGV-1395174_19	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-1395174_19	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-1395174_19	Pfam	PF19789	NA	DUF6273
UHGV-1395174_19	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1395174_19	Structural annotation	PF19789	NA	NA
UHGV-1395174_20	PHROG	phrog_29409	NA	unknown function
UHGV-1395174_20	UniRef90	UniRef90_A0A2A7AET6	Isoaspartyl peptidase	NA
UHGV-1395174_22	Structural annotation	PF14600	NA	NA
UHGV-1395174_25	PHROG	phrog_13256	NA	unknown function
UHGV-1395174_25	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-1395174_26	PHROG	phrog_14030	NA	unknown function
UHGV-1395174_26	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-1395174_26	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-1395174_26	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1395174_27	Structural annotation	PF13412, MF_00674, COG1342	NA	NA
UHGV-1395174_28	eggNOG-mapper	760568.Desku_0885	NA	NA
UHGV-1395174_28	Structural annotation	PF14528, PF05204, MF_01420, TIGR00647, COG3780	NA	NA
UHGV-1395174_30	PHROG	phrog_25567	NA	unknown function
UHGV-1395174_30	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-1395174_30	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1395174_30	Structural annotation	PF13560, NF040522, COG2944	NA	NA
UHGV-1395174_35	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-1395174_35	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1395174_36	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1395174_36	PHROG	phrog_95	integrase	integration and excision
UHGV-1395174_36	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-1395174_36	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-1395174_36	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1395174_36	Pfam	PF07508	Recombinase	Recombinase
UHGV-1395174_36	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1395174_36	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1395174_36	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1395174_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1395174_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1395174_37	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-1395174_38	PHROG	phrog_10292	NA	unknown function
UHGV-1395174_38	UniRef90	UniRef90_A0A416W984	TM2 domain-containing protein	NA
UHGV-1395174_38	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-1395174_38	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1395174_38	Pfam	PF05154	TM2 domain	TM2
UHGV-1395174_38	COG	COG2314	NA	NA
UHGV-1395174_39	eggNOG-mapper	622312.ROSEINA2194_02761	NOG18738 non supervised orthologous group	NA
UHGV-1395174_39	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-1395174_39	Structural annotation	PF02805	NA	NA
UHGV-1395174_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1395174_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1395174_41	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-1395174_41	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-1395174_41	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1395174_41	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1395174_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1395174_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1395174_47	eggNOG-mapper	642492.Clole_0961	NA	NA
UHGV-1395174_47	Structural annotation	PF12286	NA	NA
UHGV-1395174_48	Structural annotation	PF10548	NA	NA
UHGV-1395174_51	Structural annotation	PF05082	NA	NA
UHGV-1395174_54	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-1395174_56	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1395174_56	UniRef90	UniRef90_A0A1Q6JI14	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1395174_56	eggNOG-mapper	1410628.JNKS01000054_gene544	NA	NA
UHGV-1395174_56	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1395174_56	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1395174_56	Structural annotation	PF01507, MF_01161, NF006327, COG0175	NA	NA
UHGV-1395174_57	PHROG	phrog_31107	NA	unknown function
UHGV-1395174_59	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1395174_59	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1395174_60	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-1395174_62	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1395174_62	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-1395174_62	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-1395174_62	Pfam	PF06356	NA	DUF1064
UHGV-1395174_62	Structural annotation	PF06356	NA	NA
UHGV-1395174_64	Structural annotation	PF10013	NA	NA
UHGV-1395174_70	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1395174_70	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-1395174_70	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-1395174_71	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-1395174_71	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1395174_72	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1395174_72	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-1395174_72	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-1395174_72	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1395174_72	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA