UHGV-1395594

Genome information

Genome length 37,830 bps

CDS count 55

Completeness 98.17% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-1395594
vOTU ID	vOTU-012779
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0256378
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.17% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.37
Jumbo phage	No

Genome content
Genome length	37,830 bps
GC content	33.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	89.90%
Average CDS length	620.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1395594_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1395594_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1395594_1	UniRef90	UniRef90_R5YR86	Site-specific recombinase	NA
UHGV-1395594_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-1395594_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1395594_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1395594_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1395594_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1395594_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1395594_2	PHROG	phrog_5059	NA	unknown function
UHGV-1395594_2	UniRef90	UniRef90_A0A7X5EGP0	NA	NA
UHGV-1395594_2	eggNOG-mapper	717606.PaecuDRAFT_2356	NA	NA
UHGV-1395594_2	Pfam	PF08861	NA	DUF1828
UHGV-1395594_2	Pfam	PF08862	NA	DUF1829
UHGV-1395594_2	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-1395594_3	PHROG	phrog_17771	NA	unknown function
UHGV-1395594_3	UniRef90	UniRef90_E4Q765	Putative Lj965 prophage protein	NA
UHGV-1395594_3	eggNOG-mapper	632292.Calhy_0844	NA	NA
UHGV-1395594_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1395594_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1395594_4	UniRef90	UniRef90_R6P5B8	DNA-binding helix-turn-helix protein	NA
UHGV-1395594_4	eggNOG-mapper	903814.ELI_3181	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1395594_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1395594_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1395594_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1395594_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1395594_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1395594_5	UniRef90	UniRef90_R5ZK71	Putative repressor LexA	NA
UHGV-1395594_5	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1395594_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1395594_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1395594_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1395594_5	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-1395594_7	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-1395594_7	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-1395594_7	Pfam	PF05339	NA	DUF739
UHGV-1395594_7	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1395594_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1395594_11	UniRef90	UniRef90_UPI0019150417	YqaJ viral recombinase family protein	NA
UHGV-1395594_11	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-1395594_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1395594_11	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1395594_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1395594_11	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1395594_12	PHROG	phrog_674	NA	unknown function
UHGV-1395594_12	UniRef90	UniRef90_A0A413RZX0	NA	NA
UHGV-1395594_12	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-1395594_12	Pfam	PF07083	NA	DUF1351
UHGV-1395594_12	Structural annotation	PF07083	NA	NA
UHGV-1395594_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1395594_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1395594_14	UniRef90	UniRef90_A0A413RCV3	Recombinase	NA
UHGV-1395594_14	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-1395594_14	Pfam	PF03837	RecT family	RecT
UHGV-1395594_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1395594_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1395594_14	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1395594_15	Structural annotation	PF21715, COG1654	NA	NA
UHGV-1395594_16	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1395594_16	eggNOG-mapper	1280692.AUJL01000044_gene2344	NA	NA
UHGV-1395594_16	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1395594_17	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1395594_17	UniRef90	UniRef90_R5ZK48	NA	NA
UHGV-1395594_17	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-1395594_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1395594_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1395594_17	Structural annotation	PF14297	NA	NA
UHGV-1395594_18	Structural annotation	PF20531	NA	NA
UHGV-1395594_19	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1395594_19	UniRef90	UniRef90_R7CC66	NUMOD4 domain-containing protein	NA
UHGV-1395594_19	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-1395594_19	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1395594_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1395594_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1395594_20	UniRef90	UniRef90_UPI000E475660	SNF2-related protein	NA
UHGV-1395594_20	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-1395594_20	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-1395594_20	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1395594_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1395594_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1395594_20	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-1395594_22	PHROG	phrog_17690	NA	unknown function
UHGV-1395594_22	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-1395594_22	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-1395594_24	UniRef90	UniRef90_A0A373LPL3	Chemotaxis protein	NA
UHGV-1395594_24	eggNOG-mapper	1042156.CXIVA_01870	NA	NA
UHGV-1395594_24	Structural annotation	NF008671, COG4710	NA	NA
UHGV-1395594_25	UniRef90	UniRef90_A0A373LPL3	Chemotaxis protein	NA
UHGV-1395594_25	eggNOG-mapper	1042156.CXIVA_01870	NA	NA
UHGV-1395594_25	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-1395594_27	PHROG	phrog_20441	NA	unknown function
UHGV-1395594_27	UniRef90	UniRef90_UPI00189AA79A	NA	NA
UHGV-1395594_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1395594_28	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-1395594_28	eggNOG-mapper	1408303.JNJJ01000049_gene2728	NA	NA
UHGV-1395594_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1395594_28	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-1395594_29	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-1395594_29	UniRef90	UniRef90_R5YPA6	ParB-like protein	NA
UHGV-1395594_29	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-1395594_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1395594_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1395594_29	Pfam	PF14386	NA	DUF4417
UHGV-1395594_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1395594_29	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-1395594_32	Structural annotation	PF15887, COG4307	NA	NA
UHGV-1395594_33	PHROG	phrog_2412	NA	unknown function
UHGV-1395594_33	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-1395594_33	eggNOG-mapper	563192.HMPREF0179_00168	NA	NA
UHGV-1395594_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1395594_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1395594_34	UniRef90	UniRef90_A0A173W6A0	Phage terminase, large subunit, PBSX family	NA
UHGV-1395594_34	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-1395594_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1395594_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1395594_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1395594_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-1395594_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1395594_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-1395594_35	UniRef90	UniRef90_R5YR52	Phage portal protein SPP1 family	NA
UHGV-1395594_35	eggNOG-mapper	877414.ATWA01000001_gene907	Phage portal protein, SPP1 family	NA
UHGV-1395594_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1395594_35	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1395594_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1395594_36	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1395594_36	UniRef90	UniRef90_R5YXK3	Phage head morphogenesis protein SPP1 gp7 family	NA
UHGV-1395594_36	eggNOG-mapper	1158607.UAU_01754	Phage Mu protein F like protein	NA
UHGV-1395594_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1395594_36	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1395594_36	COG	COG2369	NA	NA
UHGV-1395594_36	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1395594_38	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1395594_38	UniRef90	UniRef90_UPI000F53BD28	NA	NA
UHGV-1395594_38	eggNOG-mapper	1504823.CCMM01000008_gene1042	NA	NA
UHGV-1395594_38	Pfam	PF14265	NA	DUF4355
UHGV-1395594_38	Structural annotation	PF14265	NA	NA
UHGV-1395594_39	PHROG	phrog_267	major head protein	head and packaging
UHGV-1395594_39	UniRef90	UniRef90_A0A6N2YA79	P22 coat protein - gene protein 5	NA
UHGV-1395594_39	eggNOG-mapper	1235800.C819_00485	P22 coat protein-protein 5 domain protein	NA
UHGV-1395594_39	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1395594_39	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1395594_41	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1395594_41	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1395594_41	Structural annotation	PF05135	NA	NA
UHGV-1395594_42	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1395594_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1395594_43	UniRef90	UniRef90_R5ZK28	HK97 gp10 family phage protein	NA
UHGV-1395594_43	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1395594_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1395594_43	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1395594_43	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1395594_44	eggNOG-mapper	268407.PWYN_03005	NA	NA
UHGV-1395594_44	Structural annotation	PF05657	NA	NA
UHGV-1395594_45	PHROG	phrog_158	major tail protein	tail
UHGV-1395594_45	UniRef90	UniRef90_R5YR40	Major tail protein putative	NA
UHGV-1395594_45	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-1395594_45	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1395594_46	Structural annotation	PF11836	NA	NA
UHGV-1395594_48	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1395594_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1395594_48	UniRef90	UniRef90_A0A173W8C4	Chromosome segregation protein	NA
UHGV-1395594_48	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-1395594_48	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1395594_49	PHROG	phrog_1194	NA	unknown function
UHGV-1395594_49	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-1395594_49	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-1395594_49	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1395594_50	PHROG	phrog_6616	tail protein	tail
UHGV-1395594_50	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-1395594_50	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-1395594_50	COG	COG4926	Phage-related protein	NA
UHGV-1395594_50	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1395594_51	Structural annotation	PF10651, PF19487, NF033814, COG2372	NA	NA
UHGV-1395594_52	PHROG	phrog_4105	NA	unknown function
UHGV-1395594_52	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-1395594_53	PHROG	phrog_443	holin	lysis
UHGV-1395594_53	UniRef90	UniRef90_A0A1I5VN65	Phage r1t holin	NA
UHGV-1395594_53	eggNOG-mapper	411463.EUBVEN_02210	Putative lactococcus lactis phage r1t holin	NA
UHGV-1395594_53	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1395594_53	Structural annotation	PF16945	NA	NA
UHGV-1395594_54	PHROG	phrog_872	NA	unknown function
UHGV-1395594_54	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1395594_54	dbAPIS	APIS052	NA	NA
UHGV-1395594_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1395594_55	PHROG	phrog_670	endolysin	lysis
UHGV-1395594_55	UniRef90	UniRef90_A0A352SK06	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1395594_55	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1395594_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1395594_55	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1395594_55	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA