UHGV-1395721

Genome information

vOTU vOTU-019033

Genome length 16,917 bps

CDS count 21

Completeness 80.80% (medium-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-1395721
vOTU ID	vOTU-019033
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0116206
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.68
Jumbo phage	No

Genome content
Genome length	16,917 bps
GC content	36.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	89.71%
Average CDS length	726.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1395721_7	Structural annotation	PF06013, MF_00683, NF003844, COG4842	NA	NA
UHGV-1395721_9	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1395721_9	PHROG	phrog_15001	endolysin	lysis
UHGV-1395721_9	UniRef90	UniRef90_A0A7X8ZAJ8	Amidase	NA
UHGV-1395721_9	eggNOG-mapper	498761.HM1_2867	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1395721_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1395721_9	COG	COG1388	LysM repeat	NA
UHGV-1395721_9	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1395721_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-1395721_10	UniRef90	UniRef90_P11014	DNA packaging protein	NA
UHGV-1395721_10	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1395721_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1395721_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1395721_11	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1395721_11	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-1395721_11	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-1395721_12	PHROG	phrog_10365	late transcriptional activator	transcription regulation
UHGV-1395721_12	Pfam	PF05464	Phi-29-like late genes activator (early protein GP4)	Phi-29_GP4
UHGV-1395721_12	Structural annotation	PF05464	NA	NA
UHGV-1395721_13	PHROG	phrog_6358	DNA terminal protein	DNA, RNA and nucleotide metabolism
UHGV-1395721_13	Pfam	PF05435	Phi-29 DNA terminal protein GP3	Phi-29_GP3
UHGV-1395721_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1395721_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1395721_14	UniRef90	UniRef90_B7SSM2	DNA polymerase	NA
UHGV-1395721_14	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-1395721_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1395721_14	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1395721_15	PHROG	phrog_199	holin	lysis
UHGV-1395721_15	UniRef90	UniRef90_S0JIJ3	Toxin secretion/phage lysis holin	NA
UHGV-1395721_15	eggNOG-mapper	1235790.C805_00883	Bacteriophage holin family	NA
UHGV-1395721_15	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1395721_15	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1395721_15	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1395721_15	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1395721_17	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1395721_17	UniRef90	UniRef90_UPI000D1EFE69	phage head protein	NA
UHGV-1395721_17	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-1395721_17	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1395721_18	PHROG	phrog_2248	tail protein	tail
UHGV-1395721_18	UniRef90	UniRef90_A0A843GNE5	Caud_tail_N domain-containing protein	NA
UHGV-1395721_18	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-1395721_18	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1395721_18	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1395721_18	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1395721_19	PHROG	phrog_2038	upper collar connector	connector
UHGV-1395721_19	UniRef90	UniRef90_A0A1W7LXQ5	Putative Connector protein	NA
UHGV-1395721_19	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-1395721_19	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1395721_19	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1395721_20	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1395721_20	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA