UHGV-1395996

Genome information

vOTU vOTU-019467

Genome length 38,783 bps

CDS count 55

Completeness 83.48% (medium-quality)

geNomad score 0.9601

Prediction confidence Confident

Genome information
Genome ID	UHGV-1395996
vOTU ID	vOTU-019467
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0261868
BioSample	SAMN01779930
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9601
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.08
Jumbo phage	No

Genome content
Genome length	38,783 bps
GC content	29.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.05%
Average CDS length	644.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1395996_1	PHROG	phrog_1780	tail collar fiber protein	tail
UHGV-1395996_1	UniRef90	UniRef90_UPI00036EEF97	phage tail protein	NA
UHGV-1395996_1	eggNOG-mapper	536232.CLM_2504	Phage tail-collar fibre protein	NA
UHGV-1395996_1	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-1395996_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1395996_2	PHROG	phrog_521	tail protein	tail
UHGV-1395996_2	UniRef90	UniRef90_UPI0002DF3ACF	NA	NA
UHGV-1395996_2	eggNOG-mapper	1415774.U728_1068	NA	NA
UHGV-1395996_2	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1395996_2	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1395996_2	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1395996_3	PHROG	phrog_6	baseplate protein	tail
UHGV-1395996_3	UniRef90	UniRef90_UPI000DE962FD	baseplate J/gp47 family protein	NA
UHGV-1395996_3	eggNOG-mapper	1415774.U728_1069	Baseplate J-like protein	NA
UHGV-1395996_3	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1395996_3	COG	COG3299	NA	NA
UHGV-1395996_3	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1395996_4	PHROG	phrog_120	baseplate protein	tail
UHGV-1395996_4	UniRef90	UniRef90_UPI000DE8BB0F	NA	NA
UHGV-1395996_4	eggNOG-mapper	931276.Cspa_c27060	NA	NA
UHGV-1395996_4	Pfam	PF10934	NA	DUF2634
UHGV-1395996_4	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1395996_5	PHROG	phrog_579	NA	unknown function
UHGV-1395996_5	UniRef90	UniRef90_UPI000DE8E80A	NA	NA
UHGV-1395996_5	eggNOG-mapper	931276.Cspa_c27050	NA	NA
UHGV-1395996_5	Pfam	PF10844	NA	DUF2577
UHGV-1395996_6	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1395996_6	PHROG	phrog_329	minor tail protein	tail
UHGV-1395996_6	UniRef90	UniRef90_UPI0012B96309	NlpC/P60 family protein	NA
UHGV-1395996_6	eggNOG-mapper	931276.Cspa_c27040	NlpC/P60 family	NA
UHGV-1395996_6	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1395996_6	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1395996_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1395996_7	PHROG	phrog_400	tail protein	tail
UHGV-1395996_7	UniRef90	UniRef90_A0A3P6KNL9	Phage-like element pbsx protein xkdQ	NA
UHGV-1395996_7	eggNOG-mapper	1415774.U728_1073	NLP P60 protein	NA
UHGV-1395996_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1395996_8	PHROG	phrog_380	endolysin	lysis
UHGV-1395996_8	UniRef90	UniRef90_UPI001D26D30E	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1395996_8	eggNOG-mapper	1415774.U728_1075	LysM domain	NA
UHGV-1395996_8	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1395996_8	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-1395996_9	UniRef90	UniRef90_A0A3P6K1Y8	Putative prophage LambdaBa01, membrane protein	NA
UHGV-1395996_9	eggNOG-mapper	931276.Cspa_c27010	tape measure	NA
UHGV-1395996_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1395996_10	eggNOG-mapper	931276.Cspa_c27000	NA	NA
UHGV-1395996_11	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-1395996_11	eggNOG-mapper	931276.Cspa_c26990	NA	NA
UHGV-1395996_11	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-1395996_12	PHROG	phrog_365	tail protein	tail
UHGV-1395996_12	UniRef90	UniRef90_UPI001D55272F	phage tail tube protein	NA
UHGV-1395996_12	eggNOG-mapper	931276.Cspa_c26980	Phage tail tube protein	NA
UHGV-1395996_12	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1395996_13	PHROG	phrog_1480	tail sheath	tail
UHGV-1395996_13	UniRef90	UniRef90_UPI00136F12B8	phage tail protein	NA
UHGV-1395996_13	eggNOG-mapper	931276.Cspa_c26970	Phage tail sheath C-terminal domain	NA
UHGV-1395996_13	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1395996_13	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1395996_14	PHROG	phrog_525	NA	unknown function
UHGV-1395996_14	eggNOG-mapper	931276.Cspa_c26960	NA	NA
UHGV-1395996_14	Pfam	PF20765	NA	DUF6838
UHGV-1395996_14	Structural annotation	PF20765, NF040576, COG5003	NA	NA
UHGV-1395996_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1395996_15	UniRef90	UniRef90_UPI0012B8608A	HK97 gp10 family phage protein	NA
UHGV-1395996_15	eggNOG-mapper	931276.Cspa_c26950	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1395996_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1395996_15	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1395996_16	eggNOG-mapper	1415774.U728_719	NA	NA
UHGV-1395996_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1395996_17	UniRef90	UniRef90_A0A1S8PGZ4	Phage gp6-like head-tail connector protein	NA
UHGV-1395996_17	eggNOG-mapper	1499683.CCFF01000005_gene71	NA	NA
UHGV-1395996_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-1395996_18	UniRef90	UniRef90_A0A3P6JQ83	Major capsid protein E	NA
UHGV-1395996_18	eggNOG-mapper	1345695.CLSA_c29920	Phage major capsid protein E	NA
UHGV-1395996_18	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1395996_18	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1395996_19	PHROG	phrog_909	major head protein	head and packaging
UHGV-1395996_19	UniRef90	UniRef90_UPI001D2572A1	head decoration protein	NA
UHGV-1395996_19	eggNOG-mapper	1345695.CLSA_c29930	NA	NA
UHGV-1395996_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1395996_20	UniRef90	UniRef90_UPI000DEA12C2	NA	NA
UHGV-1395996_20	eggNOG-mapper	1345695.CLSA_c29940	NA	NA
UHGV-1395996_20	Pfam	PF14265	NA	DUF4355
UHGV-1395996_20	Structural annotation	PF14265	NA	NA
UHGV-1395996_21	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1395996_21	UniRef90	UniRef90_UPI001F3ECC8A	NA	NA
UHGV-1395996_21	eggNOG-mapper	1415774.U728_1667	NA	NA
UHGV-1395996_21	Structural annotation	PF14359	NA	NA
UHGV-1395996_22	PHROG	phrog_5106	NA	unknown function
UHGV-1395996_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1395996_23	UniRef90	UniRef90_UPI001DEF4D2B	minor capsid protein	NA
UHGV-1395996_23	eggNOG-mapper	1415774.U728_1092	Phage Mu protein F like protein	NA
UHGV-1395996_23	COG	COG2369	NA	NA
UHGV-1395996_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-1395996_24	UniRef90	UniRef90_UPI000DEBD282	phage portal protein	NA
UHGV-1395996_24	eggNOG-mapper	1280692.AUJL01000004_gene853	portal protein, SPP1 Gp6-like	NA
UHGV-1395996_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1395996_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1395996_25	PHROG	phrog_14112	NA	unknown function
UHGV-1395996_25	eggNOG-mapper	573061.Clocel_3549	TIGRFAM Phage	NA
UHGV-1395996_25	COG	COG5362	Phage terminase large subunit	NA
UHGV-1395996_25	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1395996_27	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-1395996_27	UniRef90	UniRef90_UPI00136F15B3	helix-turn-helix domain-containing protein	NA
UHGV-1395996_27	eggNOG-mapper	573061.Clocel_3552	Helix-turn-helix domain of resolvase	NA
UHGV-1395996_27	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1395996_27	Structural annotation	PF13384, COG3677	NA	NA
UHGV-1395996_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1395996_28	UniRef90	UniRef90_A0A6L9ERT2	Xanthine dehydrogenase	NA
UHGV-1395996_28	eggNOG-mapper	1345695.CLSA_c30010	sigma factor activity	NA
UHGV-1395996_28	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1395996_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1395996_28	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1395996_29	AcrCatalog	cluster_22190	NA	NA
UHGV-1395996_31	eggNOG-mapper	290402.Cbei_0897	NA	NA
UHGV-1395996_31	Structural annotation	PF08948, MF_01537, TIGR03711	NA	NA
UHGV-1395996_32	UniRef90	UniRef90_UPI0018AA8F3E	RES family NAD+ phosphorylase	NA
UHGV-1395996_32	Pfam	PF08808	RES domain	RES
UHGV-1395996_33	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1395996_33	PHROG	phrog_26824	NA	unknown function
UHGV-1395996_33	UniRef90	UniRef90_A0A6N3FM94	DNA primase	NA
UHGV-1395996_33	eggNOG-mapper	536233.CLO_0520	DNA primase	NA
UHGV-1395996_33	PADLOC	drt-UG29	DRT	DRT
UHGV-1395996_33	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1395996_33	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1395996_33	Structural annotation	PF01807, PF06048, PF19898, MF_00974, NF005477, COG5519, COG0358	NA	NA
UHGV-1395996_34	UniRef90	UniRef90_A0A6L9ENL4	NA	NA
UHGV-1395996_34	eggNOG-mapper	1280692.AUJL01000009_gene2995	NA	NA
UHGV-1395996_34	Pfam	PF18892	NA	DUF5651
UHGV-1395996_34	Structural annotation	PF18892	NA	NA
UHGV-1395996_36	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1395996_36	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-1395996_36	eggNOG-mapper	1499683.CCFF01000017_gene2593	NA	NA
UHGV-1395996_36	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-1395996_37	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1395996_37	UniRef90	UniRef90_A0A2A7MK70	Molybdopterin-guanine dinucleotide biosynthesis protein A	NA
UHGV-1395996_37	eggNOG-mapper	536233.CLO_0515	ERCC4 domain	NA
UHGV-1395996_37	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1395996_37	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-1395996_38	PHROG	phrog_1455	NA	unknown function
UHGV-1395996_38	eggNOG-mapper	1415774.U728_1114	NA	NA
UHGV-1395996_38	Pfam	PF21793	NA	DUF6877
UHGV-1395996_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1395996_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1395996_39	UniRef90	UniRef90_A0A6L9EN59	Single-stranded DNA-binding protein	NA
UHGV-1395996_39	eggNOG-mapper	536233.CLO_0510	Single-strand binding protein family	NA
UHGV-1395996_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1395996_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1395996_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1395996_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1395996_39	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1395996_40	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-1395996_40	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-1395996_40	UniRef90	UniRef90_A0A6L9EP77	Metal-dependent phosphohydrolase	NA
UHGV-1395996_40	eggNOG-mapper	536233.CLO_0509	PFAM HD domain	NA
UHGV-1395996_40	Pfam	PF01966	HD domain	HD
UHGV-1395996_40	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-1395996_40	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-1395996_41	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1395996_41	UniRef90	UniRef90_A0A7G5NUK1	Phage recombination protein Bet	NA
UHGV-1395996_41	eggNOG-mapper	536233.CLO_0507	Phage recombination protein Bet	NA
UHGV-1395996_41	Pfam	PF03837	RecT family	RecT
UHGV-1395996_41	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1395996_41	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1395996_41	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-1395996_44	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1395996_44	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1395996_44	UniRef90	UniRef90_A0A6N3FL89	Chromosome partition protein Smc	NA
UHGV-1395996_44	eggNOG-mapper	536233.CLO_0505	ATPase involved in DNA repair	NA
UHGV-1395996_44	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1395996_44	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1395996_47	PHROG	phrog_7199	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1395996_47	UniRef90	UniRef90_I2E8Z1	Gp28	NA
UHGV-1395996_47	eggNOG-mapper	632245.CLP_1273	NA	NA
UHGV-1395996_50	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1395996_50	UniRef90	UniRef90_A0A0F4VPA3	Phage antirepressor	NA
UHGV-1395996_50	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-1395996_50	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1395996_50	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1395996_50	Structural annotation	PF09669, PF10552, TIGR02681, COG3646	NA	NA
UHGV-1395996_51	UniRef90	UniRef90_A0A6L9ENN8	Helix-turn-helix domain-containing protein	NA
UHGV-1395996_51	eggNOG-mapper	931276.Cspa_c07470	Helix-turn-helix XRE-family like proteins	NA
UHGV-1395996_51	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1395996_51	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1395996_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1395996_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1395996_52	UniRef90	UniRef90_A0A6L9EN33	Helix-turn-helix domain-containing protein	NA
UHGV-1395996_52	eggNOG-mapper	1391647.AVSV01000003_gene1777	Helix-turn-helix XRE-family like proteins	NA
UHGV-1395996_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1395996_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1395996_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1395996_52	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1395996_53	PHROG	phrog_87	metallo-protease	other
UHGV-1395996_53	UniRef90	UniRef90_A0A1I2PV74	Peptidase_M78 domain-containing protein	NA
UHGV-1395996_53	eggNOG-mapper	1280692.AUJL01000011_gene3215	Zn peptidase	NA
UHGV-1395996_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1395996_53	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1395996_54	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1395996_54	PHROG	phrog_95	integrase	integration and excision
UHGV-1395996_54	UniRef90	UniRef90_UPI000DE9D1E4	recombinase family protein	NA
UHGV-1395996_54	eggNOG-mapper	1391647.AVSV01000054_gene2735	resolvase	NA
UHGV-1395996_54	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1395996_54	Pfam	PF07508	Recombinase	Recombinase
UHGV-1395996_54	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1395996_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1395996_54	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-1395996_55	UniRef90	UniRef90_A0A1W1WZV9	Glucose inhibited division protein A	NA
UHGV-1395996_55	eggNOG-mapper	632245.CLP_2270	division protein A	NA
UHGV-1395996_55	Pfam	PF01134	Glucose inhibited division protein A	GIDA
UHGV-1395996_55	COG	COG1206	Folate-dependent tRNA-U54 methylase TrmFO/GidA	NA