UHGV-1396368

Genome information

Genome length 37,994 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-1396368
vOTU ID	vOTU-074493
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0257362
BioSample	SAMEA2581954
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.83
Jumbo phage	No

Genome content
Genome length	37,994 bps
GC content	44.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.22%
Average CDS length	659.00 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1396368_2	PHROG	phrog_1640	tail protein	tail
UHGV-1396368_2	eggNOG-mapper	1322246.BN4_12406	Belongs to the glycosyl hydrolase 28 family	NA
UHGV-1396368_2	COG	COG5434	Polygalacturonase	NA
UHGV-1396368_2	Structural annotation	PF03906, COG5448	NA	NA
UHGV-1396368_3	PHROG	phrog_9880	NA	unknown function
UHGV-1396368_3	UniRef90	UniRef90_A0A412X674	MuF_C domain-containing protein	NA
UHGV-1396368_3	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-1396368_4	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-1396368_4	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-1396368_4	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1396368_4	Structural annotation	PF01464, COG0741	NA	NA
UHGV-1396368_6	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1396368_6	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-1396368_6	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-1396368_7	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1396368_7	eggNOG-mapper	28152.DJ57_2249	NA	NA
UHGV-1396368_7	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-1396368_7	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-1396368_8	PHROG	phrog_376	tail protein	tail
UHGV-1396368_8	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-1396368_8	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-1396368_8	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1396368_8	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1396368_9	PHROG	phrog_394	tail protein	tail
UHGV-1396368_9	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-1396368_9	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-1396368_9	Structural annotation	PF17212	NA	NA
UHGV-1396368_10	Structural annotation	PF12949	NA	NA
UHGV-1396368_11	Structural annotation	PF21190	NA	NA
UHGV-1396368_12	PHROG	phrog_212	major head protein	head and packaging
UHGV-1396368_12	UniRef90	UniRef90_A0A0M3F638	NA	NA
UHGV-1396368_12	eggNOG-mapper	699218.HMPREF0889_0284	NA	NA
UHGV-1396368_12	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1396368_12	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1396368_13	PHROG	phrog_458	protease	other
UHGV-1396368_13	UniRef90	UniRef90_UPI001C8B3789	peptidase	NA
UHGV-1396368_13	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-1396368_15	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1396368_15	UniRef90	UniRef90_UPI001D01A9F3	portal protein	NA
UHGV-1396368_15	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-1396368_15	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1396368_15	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1396368_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1396368_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1396368_17	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-1396368_17	eggNOG-mapper	585503.HMPREF7545_1731	Terminase-like family	NA
UHGV-1396368_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1396368_17	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-1396368_17	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1396368_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1396368_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1396368_18	UniRef90	UniRef90_A0A5C7M8I7	Terminase small subunit (Fragment)	NA
UHGV-1396368_18	eggNOG-mapper	1196028.ALEF01000043_gene470	Terminase small subunit	NA
UHGV-1396368_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1396368_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1396368_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1396368_19	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-1396368_19	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1396368_21	UniRef90	UniRef90_UPI001BD1883E	NA	NA
UHGV-1396368_21	eggNOG-mapper	1003200.AXXA_28145	NA	NA
UHGV-1396368_21	Pfam	PF11753	NA	DUF3310
UHGV-1396368_22	PHROG	phrog_289	GTP-binding domain	other
UHGV-1396368_22	UniRef90	UniRef90_UPI001BB42FF0	SLOG family protein	NA
UHGV-1396368_22	eggNOG-mapper	195253.Syn6312_2892	NA	NA
UHGV-1396368_22	Pfam	PF10686	YspA, cpYpsA-related SLOG family	YAcAr
UHGV-1396368_22	COG	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	NA
UHGV-1396368_22	Structural annotation	PF18306, MF_01575, TIGR00732, COG0758	NA	NA
UHGV-1396368_23	UniRef90	UniRef90_A0A1Q6R577	NA	NA
UHGV-1396368_23	Structural annotation	PF18892	NA	NA
UHGV-1396368_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1396368_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1396368_24	UniRef90	UniRef90_R6I9W6	Single-stranded DNA-binding protein	NA
UHGV-1396368_24	eggNOG-mapper	1262915.BN574_00939	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1396368_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1396368_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1396368_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1396368_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1396368_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1396368_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1396368_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1396368_28	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1396368_28	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-1396368_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1396368_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1396368_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1396368_31	Structural annotation	COG3461	NA	NA
UHGV-1396368_32	PHROG	phrog_9804	NA	unknown function
UHGV-1396368_32	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-1396368_32	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-1396368_32	Structural annotation	PF11417	NA	NA
UHGV-1396368_33	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1396368_33	eggNOG-mapper	1298920.KI911353_gene2714	DnaD domain protein	NA
UHGV-1396368_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1396368_34	PHROG	phrog_11718	NA	unknown function
UHGV-1396368_34	UniRef90	UniRef90_A0A6G3LYJ5	Helix-turn-helix domain-containing protein	NA
UHGV-1396368_34	eggNOG-mapper	1120746.CCNL01000010_gene1263	NA	NA
UHGV-1396368_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1396368_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1396368_35	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1396368_35	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-1396368_35	Pfam	PF05772	NinB protein	NinB
UHGV-1396368_35	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1396368_36	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1396368_36	UniRef90	UniRef90_UPI00026C1BB2	AP2 domain-containing protein	NA
UHGV-1396368_36	eggNOG-mapper	673376.F2VHW3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1396368_36	AcrCatalog	cluster_113756	NA	NA
UHGV-1396368_36	Structural annotation	PF17375	NA	NA
UHGV-1396368_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1396368_38	PHROG	phrog_14970	NA	unknown function
UHGV-1396368_38	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-1396368_38	eggNOG-mapper	642492.Clole_0944	double-strand break repair protein	NA
UHGV-1396368_38	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1396368_38	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1396368_38	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1396368_41	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1396368_42	eggNOG-mapper	1262915.BN574_00130	Inhibits cell division during the SOS response. Affects a later stage of the cell division protein assembly, after the assembly of the Z ring, by probably suppressing recruitment of FtsL and or DivIC to the division machinery	NA
UHGV-1396368_42	COG	COG1388	LysM repeat	NA
UHGV-1396368_42	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-1396368_43	PHROG	phrog_6058	NA	unknown function
UHGV-1396368_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1396368_44	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1396368_44	UniRef90	UniRef90_R8E8R9	HTH cro/C1-type domain-containing protein	NA
UHGV-1396368_44	eggNOG-mapper	1121289.JHVL01000079_gene1186	sequence-specific DNA binding	NA
UHGV-1396368_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1396368_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1396368_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1396368_44	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1396368_48	PHROG	phrog_918	NA	unknown function
UHGV-1396368_48	UniRef90	UniRef90_UPI0008DFA801	NA	NA
UHGV-1396368_48	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-1396368_48	Pfam	PF19791	NA	DUF6275
UHGV-1396368_48	Structural annotation	PF19791	NA	NA
UHGV-1396368_49	PHROG	phrog_5867	endolysin	lysis
UHGV-1396368_49	UniRef90	UniRef90_A0A7X2XH64	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1396368_49	eggNOG-mapper	1262914.BN533_02021	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1396368_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1396368_49	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1396368_49	Structural annotation	MF_04111	NA	NA
UHGV-1396368_50	PHROG	phrog_2143	NA	unknown function
UHGV-1396368_51	eggNOG-mapper	936573.HMPREF1147_1352	NA	NA
UHGV-1396368_53	PHROG	phrog_1348	tail fiber protein	tail
UHGV-1396368_53	Structural annotation	PF14301	NA	NA
UHGV-1396368_54	UniRef90	UniRef90_A0A1G6NQ88	NA	NA
UHGV-1396368_54	eggNOG-mapper	1321782.HMPREF1986_02279	COG NOG18825 non supervised orthologous group	NA
UHGV-1396368_54	Structural annotation	PF19789	NA	NA