UHGV-1396486

Genome information

Genome length 32,430 bps

CDS count 60

Completeness 71.44% (medium-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-1396486
vOTU ID	vOTU-034273
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0225191
BioSample	SAMEA2737851
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.52
Jumbo phage	No

Genome content
Genome length	32,430 bps
GC content	43.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.39%
Average CDS length	501.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1396486_1	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1396486_1	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-1396486_1	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-1396486_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1396486_1	COG	COG2369	NA	NA
UHGV-1396486_1	Structural annotation	PF06152	NA	NA
UHGV-1396486_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-1396486_3	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-1396486_3	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1396486_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1396486_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1396486_4	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1396486_4	UniRef90	UniRef90_A0A1C6CDG5	Phage terminase, large subunit, PBSX family	NA
UHGV-1396486_4	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1396486_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1396486_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1396486_4	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1396486_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1396486_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-1396486_4	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1396486_5	PHROG	phrog_33130	NA	unknown function
UHGV-1396486_5	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-1396486_5	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-1396486_9	PHROG	phrog_10714	NA	unknown function
UHGV-1396486_9	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-1396486_11	PHROG	phrog_7711	NA	unknown function
UHGV-1396486_11	UniRef90	UniRef90_A0A0N7JDH6	NA	NA
UHGV-1396486_11	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-1396486_12	PHROG	phrog_33451	NA	unknown function
UHGV-1396486_12	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-1396486_14	PHROG	phrog_8684	NA	unknown function
UHGV-1396486_14	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-1396486_14	eggNOG-mapper	397290.C810_01528	YopX protein	NA
UHGV-1396486_14	Pfam	PF09643	YopX protein	YopX
UHGV-1396486_14	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1396486_14	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1396486_16	PHROG	phrog_874	NA	unknown function
UHGV-1396486_16	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-1396486_16	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-1396486_16	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1396486_18	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-1396486_18	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1396486_18	UniRef90	UniRef90_A0A3A6JBK8	Restriction alleviation protein, Lar family	NA
UHGV-1396486_18	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1396486_18	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1396486_18	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1396486_18	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1396486_19	UniRef90	UniRef90_A0A1C5S2Z1	C2H2-type domain-containing protein	NA
UHGV-1396486_20	UniRef90	UniRef90_UPI001C009709	NA	NA
UHGV-1396486_20	Pfam	PF04448	NA	DUF551
UHGV-1396486_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1396486_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1396486_21	UniRef90	UniRef90_A0A416KCE9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1396486_21	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-1396486_21	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-1396486_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1396486_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1396486_21	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1396486_22	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1396486_22	UniRef90	UniRef90_UPI000E51D163	NA	NA
UHGV-1396486_22	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-1396486_22	Pfam	PF13643	NA	DUF4145
UHGV-1396486_22	Structural annotation	PF13643	NA	NA
UHGV-1396486_23	UniRef90	UniRef90_UPI000E4EAB4B	carboxypeptidase	NA
UHGV-1396486_23	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-1396486_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1396486_24	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-1396486_24	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-1396486_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1396486_24	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-1396486_25	PHROG	phrog_21026	NA	unknown function
UHGV-1396486_28	PHROG	phrog_7964	NA	unknown function
UHGV-1396486_28	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-1396486_28	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1396486_28	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-1396486_28	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1396486_30	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1396486_30	UniRef90	UniRef90_A0A416KCJ7	Phg_2220_C domain-containing protein	NA
UHGV-1396486_30	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-1396486_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1396486_30	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-1396486_31	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1396486_31	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-1396486_31	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1396486_33	PHROG	phrog_398	NA	unknown function
UHGV-1396486_33	UniRef90	UniRef90_UPI0001F01BA5	putative HNHc nuclease	NA
UHGV-1396486_33	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-1396486_33	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1396486_33	Structural annotation	PF16784	NA	NA
UHGV-1396486_34	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1396486_34	UniRef90	UniRef90_A0A416KCM7	NA	NA
UHGV-1396486_34	eggNOG-mapper	1140001.I571_01714	NA	NA
UHGV-1396486_34	Pfam	PF06378	NA	DUF1071
UHGV-1396486_34	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-1396486_41	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-1396486_41	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1396486_42	PHROG	phrog_7024	NA	unknown function
UHGV-1396486_42	eggNOG-mapper	1487921.DP68_11255	NA	NA
UHGV-1396486_44	Structural annotation	PF13601, TIGR04176	NA	NA
UHGV-1396486_48	UniRef90	UniRef90_A0A2N5PI32	NA	NA
UHGV-1396486_48	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-1396486_48	Pfam	PF05339	NA	DUF739
UHGV-1396486_48	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1396486_48	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-1396486_49	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1396486_49	UniRef90	UniRef90_UPI001D029144	transcriptional regulator	NA
UHGV-1396486_49	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-1396486_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1396486_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1396486_49	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-1396486_51	PHROG	phrog_806	NA	unknown function
UHGV-1396486_51	UniRef90	UniRef90_A0A1M4TTZ5	NA	NA
UHGV-1396486_51	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-1396486_51	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1396486_51	Pfam	PF11611	NA	DUF4352
UHGV-1396486_51	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-1396486_52	KOfam	K14059	int; integrase	NA
UHGV-1396486_52	PHROG	phrog_1	integrase	integration and excision
UHGV-1396486_52	UniRef90	UniRef90_A0A1C6K4B6	Tyrosine recombinase XerD	NA
UHGV-1396486_52	eggNOG-mapper	742740.HMPREF9474_03478	DNA integration	NA
UHGV-1396486_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1396486_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1396486_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1396486_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1396486_53	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1396486_53	PHROG	phrog_435	endolysin	lysis
UHGV-1396486_53	UniRef90	UniRef90_A0A373BKV9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1396486_53	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-1396486_53	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1396486_53	Pfam	PF05036	SPOR domain	SPOR
UHGV-1396486_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1396486_53	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1396486_54	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1396486_54	PHROG	phrog_1	integrase	integration and excision
UHGV-1396486_54	UniRef90	UniRef90_A0A351URM1	Tyr recombinase domain-containing protein (Fragment)	NA
UHGV-1396486_54	eggNOG-mapper	610130.Closa_0719	Belongs to the 'phage' integrase family	NA
UHGV-1396486_54	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1396486_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1396486_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1396486_54	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1396486_55	PHROG	phrog_37900	NA	unknown function
UHGV-1396486_55	UniRef90	UniRef90_UPI001C010DDB	NA	NA
UHGV-1396486_55	eggNOG-mapper	1410650.JHWL01000003_gene2823	NA	NA
UHGV-1396486_55	Pfam	PF19789	NA	DUF6273
UHGV-1396486_55	Structural annotation	PF19789	NA	NA
UHGV-1396486_56	PHROG	phrog_18725	NA	unknown function
UHGV-1396486_56	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-1396486_58	PHROG	phrog_13879	NA	unknown function
UHGV-1396486_58	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-1396486_58	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1396486_59	PHROG	phrog_1194	NA	unknown function
UHGV-1396486_59	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-1396486_59	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1396486_60	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1396486_60	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-1396486_60	COG	COG5412	Phage-related protein	NA