UHGV-1396488

Genome information

Genome length 32,429 bps

CDS count 49

Completeness 95.10% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-1396488
vOTU ID	vOTU-068561
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0225188
BioSample	SAMN05414986
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.76
Jumbo phage	No

Genome content
Genome length	32,429 bps
GC content	60.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.45%
Average CDS length	622.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1396488_1	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1396488_1	PHROG	phrog_21498	NA	unknown function
UHGV-1396488_1	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-1396488_1	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-1396488_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1396488_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1396488_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1396488_1	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-1396488_2	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1396488_2	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-1396488_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1396488_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1396488_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1396488_3	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-1396488_3	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-1396488_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1396488_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1396488_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1396488_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1396488_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-1396488_4	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-1396488_4	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-1396488_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1396488_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1396488_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1396488_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1396488_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1396488_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1396488_5	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1396488_5	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-1396488_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1396488_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1396488_5	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1396488_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-1396488_6	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-1396488_6	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1396488_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1396488_6	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1396488_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1396488_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1396488_6	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1396488_7	PHROG	phrog_749	NA	unknown function
UHGV-1396488_7	UniRef90	UniRef90_UPI001C0FB8A8	head-tail connector protein	NA
UHGV-1396488_7	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-1396488_8	PHROG	phrog_19734	NA	unknown function
UHGV-1396488_8	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-1396488_8	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-1396488_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1396488_9	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-1396488_9	Structural annotation	PF05657	NA	NA
UHGV-1396488_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1396488_10	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-1396488_10	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-1396488_10	Structural annotation	TIGR01725	NA	NA
UHGV-1396488_11	PHROG	phrog_88	major tail protein	tail
UHGV-1396488_11	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1396488_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1396488_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1396488_14	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-1396488_14	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-1396488_14	COG	COG5283	Phage-related tail protein	NA
UHGV-1396488_14	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-1396488_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1396488_15	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-1396488_15	eggNOG-mapper	994573.T472_0211980	tail component	NA
UHGV-1396488_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-1396488_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1396488_16	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1396488_16	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-1396488_16	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1396488_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1396488_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1396488_16	COG	COG4926	Phage-related protein	NA
UHGV-1396488_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1396488_17	Structural annotation	PF17642	NA	NA
UHGV-1396488_18	eggNOG-mapper	1408437.JNJN01000002_gene1389	NA	NA
UHGV-1396488_18	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1396488_18	Structural annotation	PF10651, PF04862, TIGR04362, COG5513	NA	NA
UHGV-1396488_19	PHROG	phrog_24451	NA	unknown function
UHGV-1396488_19	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-1396488_20	PHROG	phrog_30034	NA	unknown function
UHGV-1396488_20	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-1396488_20	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-1396488_20	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1396488_20	Structural annotation	PF14600	NA	NA
UHGV-1396488_21	PHROG	phrog_1863	NA	unknown function
UHGV-1396488_21	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-1396488_22	PHROG	phrog_881	holin	lysis
UHGV-1396488_22	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-1396488_22	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-1396488_22	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1396488_22	Structural annotation	PF16938	NA	NA
UHGV-1396488_23	PHROG	phrog_435	endolysin	lysis
UHGV-1396488_23	UniRef90	UniRef90_A0A8D9PDS4	Cell wall hydrolase/autolysin	NA
UHGV-1396488_23	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1396488_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1396488_23	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1396488_24	KOfam	K14059	int; integrase	NA
UHGV-1396488_24	PHROG	phrog_1	integrase	integration and excision
UHGV-1396488_24	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-1396488_24	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-1396488_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1396488_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1396488_24	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1396488_25	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-1396488_25	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-1396488_27	eggNOG-mapper	1226325.HMPREF1548_05412	Peptidoglycan-binding domain 1 protein	NA
UHGV-1396488_27	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-1396488_28	UniRef90	UniRef90_UPI001898A157	helix-turn-helix domain-containing protein	NA
UHGV-1396488_28	eggNOG-mapper	1403946.Q615_SPAC00127G0165	Peptidase S24-like	NA
UHGV-1396488_28	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1396488_28	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1396488_28	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-1396488_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1396488_31	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1396488_31	UniRef90	UniRef90_UPI000F0D19B9	helix-turn-helix domain-containing protein	NA
UHGV-1396488_31	eggNOG-mapper	1125712.HMPREF1316_2427	DNA-binding helix-turn-helix protein	NA
UHGV-1396488_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1396488_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1396488_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1396488_32	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1396488_32	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-1396488_32	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-1396488_32	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1396488_32	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1396488_32	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-1396488_34	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1396488_34	UniRef90	UniRef90_UPI001F170B82	helix-turn-helix domain-containing protein	NA
UHGV-1396488_34	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-1396488_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1396488_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1396488_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1396488_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1396488_35	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-1396488_35	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-1396488_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1396488_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1396488_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-1396488_35	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-1396488_36	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1396488_36	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1396488_36	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-1396488_36	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-1396488_36	Pfam	PF13614	AAA domain	AAA_31
UHGV-1396488_36	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1396488_36	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1396488_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1396488_37	PHROG	phrog_27290	NA	unknown function
UHGV-1396488_37	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-1396488_37	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-1396488_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1396488_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1396488_37	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-1396488_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1396488_47	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-1396488_47	Structural annotation	PF21578	NA	NA
UHGV-1396488_48	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1396488_48	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-1396488_48	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-1396488_48	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1396488_48	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA