UHGV-1396610

Genome information

Genome length 29,351 bps

CDS count 38

Completeness 82.90% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-1396610
vOTU ID	vOTU-034280
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0207751
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.71
Jumbo phage	No

Genome content
Genome length	29,351 bps
GC content	38.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	96.64%
Average CDS length	750.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1396610_2	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1396610_3	PHROG	phrog_6616	tail protein	tail
UHGV-1396610_3	eggNOG-mapper	1123263.AUKY01000051_gene1069	cellulase activity	NA
UHGV-1396610_3	COG	COG4926	Phage-related protein	NA
UHGV-1396610_3	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1396610_4	PHROG	phrog_1194	NA	unknown function
UHGV-1396610_4	eggNOG-mapper	1123263.AUKY01000051_gene1070	NA	NA
UHGV-1396610_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1396610_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1396610_5	UniRef90	UniRef90_A0A1C5TVU6	Phage-related minor tail protein	NA
UHGV-1396610_5	eggNOG-mapper	1123263.AUKY01000051_gene1071	tape measure	NA
UHGV-1396610_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1396610_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1396610_6	PHROG	phrog_8355	NA	unknown function
UHGV-1396610_6	UniRef90	UniRef90_UPI001F170E6A	Gp15 family bacteriophage protein	NA
UHGV-1396610_6	eggNOG-mapper	1123263.AUKY01000051_gene1072	NA	NA
UHGV-1396610_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1396610_6	Structural annotation	PF06854	NA	NA
UHGV-1396610_7	PHROG	phrog_8300	NA	unknown function
UHGV-1396610_7	eggNOG-mapper	1123263.AUKY01000051_gene1073	NA	NA
UHGV-1396610_7	Structural annotation	PF06896	NA	NA
UHGV-1396610_8	PHROG	phrog_820	major tail protein	tail
UHGV-1396610_8	eggNOG-mapper	1123263.AUKY01000051_gene1074	NA	NA
UHGV-1396610_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1396610_9	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1396610_9	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-1396610_9	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-1396610_9	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1396610_9	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1396610_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1396610_10	eggNOG-mapper	1123263.AUKY01000051_gene1076	NA	NA
UHGV-1396610_11	PHROG	phrog_8710	NA	unknown function
UHGV-1396610_11	eggNOG-mapper	1123263.AUKY01000051_gene1077	NA	NA
UHGV-1396610_11	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1396610_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1396610_12	eggNOG-mapper	1123263.AUKY01000051_gene1078	NA	NA
UHGV-1396610_13	PHROG	phrog_1378	NA	unknown function
UHGV-1396610_13	eggNOG-mapper	195103.CPF_0957	NA	NA
UHGV-1396610_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-1396610_14	UniRef90	UniRef90_A0A3E2WBR9	Capsid protein	NA
UHGV-1396610_14	eggNOG-mapper	483218.BACPEC_01155	NA	NA
UHGV-1396610_14	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1396610_15	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1396610_15	eggNOG-mapper	1123263.AUKY01000051_gene1081	NA	NA
UHGV-1396610_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1396610_18	UniRef90	UniRef90_UPI001D0157A8	phage minor capsid protein	NA
UHGV-1396610_18	eggNOG-mapper	679192.HMPREF9013_1305	Phage minor capsid protein 2	NA
UHGV-1396610_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1396610_18	Structural annotation	PF06152	NA	NA
UHGV-1396610_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-1396610_19	UniRef90	UniRef90_UPI001F14233C	capsid protein	NA
UHGV-1396610_19	eggNOG-mapper	1123263.AUKY01000111_gene1094	NA	NA
UHGV-1396610_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1396610_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1396610_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1396610_20	PHROG	phrog_10250	NA	unknown function
UHGV-1396610_20	UniRef90	UniRef90_D2MPJ1	Phage terminase, large subunit, PBSX family	NA
UHGV-1396610_20	eggNOG-mapper	1123263.AUKY01000111_gene1093	Phage terminase, large subunit, PBSX family	NA
UHGV-1396610_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-1396610_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1396610_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1396610_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1396610_21	UniRef90	UniRef90_UPI00138B0CFF	terminase small subunit	NA
UHGV-1396610_21	eggNOG-mapper	1123263.AUKY01000111_gene1092	DNA packaging	NA
UHGV-1396610_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1396610_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1396610_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1396610_23	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-1396610_23	UniRef90	UniRef90_A0A449BC30	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-1396610_23	eggNOG-mapper	1278311.AUAL01000005_gene498	sequence-specific DNA binding	NA
UHGV-1396610_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1396610_23	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1396610_24	Pfam	PF06296	RelE toxin of RelE / RelB toxin-antitoxin system	RelE
UHGV-1396610_24	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-1396610_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1396610_25	eggNOG-mapper	706433.HMPREF9430_01275	NA	NA
UHGV-1396610_25	Structural annotation	PF04545, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-1396610_26	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1396610_26	UniRef90	UniRef90_A0A511H124	HNHc domain-containing protein	NA
UHGV-1396610_26	eggNOG-mapper	1282664.H354_06526	HNH endonuclease	NA
UHGV-1396610_26	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1396610_26	Structural annotation	PF13392	NA	NA
UHGV-1396610_27	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-1396610_27	UniRef90	UniRef90_A0A4D6BGB6	Putative DNA-directed RNA polymerase	NA
UHGV-1396610_27	eggNOG-mapper	536233.CLO_1806	NA	NA
UHGV-1396610_27	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-1396610_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1396610_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1396610_28	UniRef90	UniRef90_UPI000CF950FC	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1396610_28	eggNOG-mapper	1140001.I571_01822	Endodeoxyribonuclease RusA	NA
UHGV-1396610_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1396610_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1396610_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1396610_30	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1396610_30	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1396610_30	UniRef90	UniRef90_D2MPJ9	Primase C terminal 2 (PriCT-2)	NA
UHGV-1396610_30	eggNOG-mapper	679192.HMPREF9013_1315	Primase C terminal 2 (PriCT-2)	NA
UHGV-1396610_30	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1396610_30	Pfam	PF13481	AAA domain	AAA_25
UHGV-1396610_30	COG	COG3598	RecA-family ATPase	NA
UHGV-1396610_30	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1396610_31	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1396610_31	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1396610_31	UniRef90	UniRef90_D2MPK0	Helicase C-terminal domain protein	NA
UHGV-1396610_31	eggNOG-mapper	679192.HMPREF9013_1316	helicase superfamily c-terminal domain	NA
UHGV-1396610_31	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1396610_31	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1396610_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1396610_31	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1396610_31	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1396610_32	PHROG	phrog_2698	NA	unknown function
UHGV-1396610_32	UniRef90	UniRef90_A0A415Z1P1	NA	NA
UHGV-1396610_32	eggNOG-mapper	679192.HMPREF9013_1317	NA	NA
UHGV-1396610_33	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1396610_33	UniRef90	UniRef90_UPI000CF86A07	ATP-binding protein	NA
UHGV-1396610_33	eggNOG-mapper	679192.HMPREF9013_1318	AAA domain	NA
UHGV-1396610_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-1396610_33	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1396610_34	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1396610_34	PHROG	phrog_1499	NA	unknown function
UHGV-1396610_34	UniRef90	UniRef90_D2MPK3	AAA_15 domain-containing protein	NA
UHGV-1396610_34	eggNOG-mapper	679192.HMPREF9013_1319	AAA ATPase domain	NA
UHGV-1396610_34	PADLOC	AAA_15	NA	NA
UHGV-1396610_34	Pfam	PF13476	AAA domain	AAA_23
UHGV-1396610_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1396610_34	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1396610_37	Structural annotation	PF11372	NA	NA
UHGV-1396610_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1396610_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1396610_38	UniRef90	UniRef90_UPI00040E4F05	phage antirepressor KilAC domain-containing protein	NA
UHGV-1396610_38	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-1396610_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1396610_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1396610_38	COG	COG3617	Prophage antirepressor	NA