UHGV-1396665

Genome information

Genome length 36,429 bps

CDS count 59

Completeness 86.27% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-1396665
vOTU ID	vOTU-034281
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0248098
BioSample	SAMEA3449351
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.65
Jumbo phage	No

Genome content
Genome length	36,429 bps
GC content	42.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.07%
Average CDS length	558.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1396665_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1396665_1	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1396665_1	UniRef90	UniRef90_A0A3R6CIB5	HNH endonuclease	NA
UHGV-1396665_1	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-1396665_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1396665_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1396665_1	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-1396665_2	PHROG	phrog_87	metallo-protease	other
UHGV-1396665_2	UniRef90	UniRef90_A0A3R5ZQW8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1396665_2	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-1396665_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1396665_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1396665_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1396665_3	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-1396665_3	UniRef90	UniRef90_A0A3A6GF44	XRE family transcriptional regulator	NA
UHGV-1396665_3	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-1396665_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1396665_3	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1396665_4	UniRef90	UniRef90_A0A7G5N1G8	XRE family transcriptional regulator	NA
UHGV-1396665_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1396665_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1396665_5	UniRef90	UniRef90_A0A6N3H7Q7	Helix-turn-helix domain protein	NA
UHGV-1396665_5	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1396665_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1396665_5	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1396665_8	UniRef90	UniRef90_R6WAU3	HTH cro/C1-type domain-containing protein	NA
UHGV-1396665_8	eggNOG-mapper	1131462.DCF50_p1826	Helix-turn-helix XRE-family like proteins	NA
UHGV-1396665_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1396665_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1396665_9	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1396665_11	PHROG	phrog_5765	NA	unknown function
UHGV-1396665_11	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-1396665_11	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-1396665_12	PHROG	phrog_3292	NA	unknown function
UHGV-1396665_12	UniRef90	UniRef90_A0A6G3M1P8	KTSC domain-containing protein	NA
UHGV-1396665_12	eggNOG-mapper	1121342.AUCO01000012_gene1704	KTSC domain	NA
UHGV-1396665_12	Pfam	PF13619	KTSC domain	KTSC
UHGV-1396665_12	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-1396665_12	Structural annotation	PF13619	NA	NA
UHGV-1396665_13	PHROG	phrog_36464	NA	unknown function
UHGV-1396665_13	UniRef90	UniRef90_R6QN85	50S ribosomal protein L11 domain protein	NA
UHGV-1396665_13	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-1396665_13	Structural annotation	PF09035	NA	NA
UHGV-1396665_15	PHROG	phrog_1499	NA	unknown function
UHGV-1396665_15	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-1396665_15	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-1396665_15	Pfam	PF13476	AAA domain	AAA_23
UHGV-1396665_15	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1396665_16	PHROG	phrog_1499	NA	unknown function
UHGV-1396665_16	eggNOG-mapper	397290.C810_05163	DNA recombination	NA
UHGV-1396665_16	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1396665_17	PHROG	phrog_3657	NA	unknown function
UHGV-1396665_17	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1396665_17	eggNOG-mapper	1304866.K413DRAFT_3015	NA	NA
UHGV-1396665_18	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1396665_18	UniRef90	UniRef90_A0A316M6N2	NA	NA
UHGV-1396665_18	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-1396665_18	Pfam	PF12684	NA	DUF3799
UHGV-1396665_18	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1396665_18	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1396665_19	PHROG	phrog_7566	NA	unknown function
UHGV-1396665_19	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-1396665_20	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1396665_20	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-1396665_20	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1396665_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1396665_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1396665_22	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1396665_22	UniRef90	UniRef90_A0A4R1AV70	DnaD domain protein	NA
UHGV-1396665_22	eggNOG-mapper	1329516.JPST01000018_gene2628	DnaD domain protein	NA
UHGV-1396665_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1396665_22	Structural annotation	PF04492, MF_01584, TIGR01610, TIGR02220, COG5625	NA	NA
UHGV-1396665_23	Structural annotation	PF09871, NF004670	NA	NA
UHGV-1396665_24	UniRef90	UniRef90_A0A143XK80	DZANK-type domain-containing protein	NA
UHGV-1396665_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1396665_26	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1396665_26	UniRef90	UniRef90_A0A356C696	Bro-N domain-containing protein	NA
UHGV-1396665_26	eggNOG-mapper	1232452.BAIB02000007_gene1603	BRO family, N-terminal domain	NA
UHGV-1396665_26	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1396665_26	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1396665_26	COG	COG3617	Prophage antirepressor	NA
UHGV-1396665_26	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1396665_27	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1396665_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1396665_27	UniRef90	UniRef90_UPI000F84D1AC	helix-turn-helix domain-containing protein	NA
UHGV-1396665_27	eggNOG-mapper	632335.Calkr_0079	SMART helix-turn-helix domain protein	NA
UHGV-1396665_27	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1396665_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1396665_27	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1396665_28	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-1396665_29	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1396665_29	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-1396665_29	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-1396665_29	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1396665_29	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1396665_29	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1396665_29	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1396665_29	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-1396665_34	PHROG	phrog_29609	NA	unknown function
UHGV-1396665_34	UniRef90	UniRef90_R7N1I0	PBECR2 domain-containing protein	NA
UHGV-1396665_34	eggNOG-mapper	1235792.C808_04677	NA	NA
UHGV-1396665_34	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-1396665_34	Structural annotation	PF18825, COG2929	NA	NA
UHGV-1396665_35	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-1396665_36	PHROG	phrog_8680	NA	unknown function
UHGV-1396665_36	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-1396665_36	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1396665_36	Pfam	PF14386	NA	DUF4417
UHGV-1396665_36	Structural annotation	PF14386	NA	NA
UHGV-1396665_38	PHROG	phrog_9479	NA	unknown function
UHGV-1396665_38	UniRef90	UniRef90_A0A2N0UXN8	Ntox24 domain-containing protein	NA
UHGV-1396665_38	Structural annotation	PF15529	NA	NA
UHGV-1396665_39	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-1396665_39	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-1396665_39	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-1396665_39	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1396665_39	COG	COG5484	NA	NA
UHGV-1396665_39	Structural annotation	PF06056, NF040601	NA	NA
UHGV-1396665_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1396665_40	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1396665_40	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-1396665_40	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-1396665_40	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1396665_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1396665_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-1396665_40	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1396665_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-1396665_41	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-1396665_41	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1396665_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1396665_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1396665_42	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-1396665_42	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1396665_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1396665_42	Structural annotation	PF11114	NA	NA
UHGV-1396665_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1396665_43	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-1396665_43	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-1396665_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1396665_43	COG	COG2369	NA	NA
UHGV-1396665_43	Structural annotation	PF06152	NA	NA
UHGV-1396665_44	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-1396665_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1396665_46	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-1396665_46	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-1396665_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1396665_47	PHROG	phrog_283	major head protein	head and packaging
UHGV-1396665_47	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-1396665_47	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-1396665_47	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1396665_47	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1396665_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1396665_48	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-1396665_49	PHROG	phrog_3366	NA	unknown function
UHGV-1396665_49	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1396665_50	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-1396665_50	Structural annotation	PF12691	NA	NA
UHGV-1396665_51	PHROG	phrog_3099	NA	unknown function
UHGV-1396665_51	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-1396665_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1396665_52	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-1396665_52	Structural annotation	PF10666	NA	NA
UHGV-1396665_53	PHROG	phrog_706	NA	unknown function
UHGV-1396665_53	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-1396665_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1396665_53	Structural annotation	PF06854	NA	NA
UHGV-1396665_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1396665_54	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-1396665_54	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-1396665_54	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1396665_54	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1396665_55	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-1396665_55	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1396665_56	PHROG	phrog_13879	NA	unknown function
UHGV-1396665_56	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-1396665_56	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1396665_57	PHROG	phrog_18725	NA	unknown function
UHGV-1396665_57	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA