UHGV-1396857

Genome information

Genome length 19,041 bps

CDS count 23

Completeness 65.90% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-1396857
vOTU ID	vOTU-017238
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0137882
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.17
Jumbo phage	No

Genome content
Genome length	19,041 bps
GC content	46.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	94.13%
Average CDS length	782.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1396857_1	PHROG	phrog_4898	holin	lysis
UHGV-1396857_2	PHROG	phrog_21357	endolysin	lysis
UHGV-1396857_2	UniRef90	UniRef90_A0A3R6VA19	CHAP domain-containing protein	NA
UHGV-1396857_2	eggNOG-mapper	665950.HMPREF1025_01328	CHAP domain	NA
UHGV-1396857_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-1396857_2	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1396857_2	COG	COG1388	LysM repeat	NA
UHGV-1396857_2	Structural annotation	PF18013	NA	NA
UHGV-1396857_4	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1396857_4	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-1396857_4	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-1396857_4	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1396857_4	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1396857_5	PHROG	phrog_2248	tail protein	tail
UHGV-1396857_5	UniRef90	UniRef90_A0A843HUB8	Caud_tail_N domain-containing protein	NA
UHGV-1396857_5	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-1396857_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1396857_5	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1396857_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1396857_6	PHROG	phrog_2038	upper collar connector	connector
UHGV-1396857_6	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-1396857_6	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-1396857_6	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1396857_6	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1396857_7	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1396857_8	PHROG	phrog_28766	tail fiber protein	tail
UHGV-1396857_9	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-1396857_9	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-1396857_9	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-1396857_9	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-1396857_9	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-1396857_9	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA
UHGV-1396857_10	PHROG	phrog_21357	endolysin	lysis
UHGV-1396857_10	UniRef90	UniRef90_R5LUK1	Peptidase C51 domain-containing protein	NA
UHGV-1396857_10	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-1396857_10	Pfam	PF05257	CHAP domain	CHAP
UHGV-1396857_10	COG	COG1388	LysM repeat	NA
UHGV-1396857_10	Structural annotation	PF10030, TIGR02594, COG4322	NA	NA
UHGV-1396857_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-1396857_11	UniRef90	UniRef90_A0A843GUV2	Phage DNA encapsidation protein	NA
UHGV-1396857_11	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1396857_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1396857_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1396857_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1396857_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1396857_12	UniRef90	UniRef90_A0A843HKN8	DNA-directed DNA polymerase	NA
UHGV-1396857_12	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-1396857_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1396857_12	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1396857_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1396857_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1396857_18	UniRef90	UniRef90_A0A542ARM6	Single-stranded DNA-binding protein	NA
UHGV-1396857_18	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-1396857_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1396857_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1396857_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1396857_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1396857_19	Structural annotation	MF_00273	NA	NA
UHGV-1396857_22	PHROG	phrog_4264	NA	unknown function
UHGV-1396857_22	eggNOG-mapper	1560313.A0A0D3MSR8_9CAUD	NA	NA
UHGV-1396857_23	Structural annotation	PF13742, MF_01959, NF009635, COG3390	NA	NA