UHGV-1397340

Genome information

vOTU vOTU-020281

Genome length 17,100 bps

CDS count 24

Completeness 76.07% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-1397340
vOTU ID	vOTU-020281
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0118310
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.1
Jumbo phage	No

Genome content
Genome length	17,100 bps
GC content	34.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	90.92%
Average CDS length	651.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1397340_3	Structural annotation	PF17548	NA	NA
UHGV-1397340_4	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1397340_4	UniRef90	UniRef90_J9GJ47	SsDNA binding protein (Fragment)	NA
UHGV-1397340_4	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-1397340_4	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-1397340_4	Structural annotation	PF17427	NA	NA
UHGV-1397340_6	PHROG	phrog_10365	late transcriptional activator	transcription regulation
UHGV-1397340_6	Pfam	PF05464	Phi-29-like late genes activator (early protein GP4)	Phi-29_GP4
UHGV-1397340_6	Structural annotation	PF05464	NA	NA
UHGV-1397340_7	Structural annotation	PF05435	NA	NA
UHGV-1397340_8	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1397340_8	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1397340_8	UniRef90	UniRef90_A0A2V2GAI8	DNA polymerase	NA
UHGV-1397340_8	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-1397340_8	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1397340_8	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1397340_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1397340_12	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-1397340_12	eggNOG-mapper	1309583.M4W8D1_9CAUD	viral capsid	NA
UHGV-1397340_12	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1397340_13	PHROG	phrog_2248	tail protein	tail
UHGV-1397340_13	UniRef90	UniRef90_A0A2V2GER8	Caud_tail_N domain-containing protein	NA
UHGV-1397340_13	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-1397340_13	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1397340_13	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1397340_13	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1397340_14	PHROG	phrog_2038	upper collar connector	connector
UHGV-1397340_14	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-1397340_14	eggNOG-mapper	1309583.M4W5Z5_9CAUD	Phage Connector (GP10)	NA
UHGV-1397340_14	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1397340_14	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1397340_15	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1397340_15	UniRef90	UniRef90_A6XAD8	Lower collar	NA
UHGV-1397340_15	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-1397340_18	KOfam	K07273	acm; lysozyme	NA
UHGV-1397340_18	PHROG	phrog_291	endolysin	lysis
UHGV-1397340_18	UniRef90	UniRef90_J9FII9	Glycoside hydrolase, family 25 (Fragment)	NA
UHGV-1397340_18	eggNOG-mapper	1437608.BBIA_2131	Glycosyl hydrolases family 25	NA
UHGV-1397340_18	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1397340_18	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1397340_18	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1397340_19	PHROG	phrog_199	holin	lysis
UHGV-1397340_19	UniRef90	UniRef90_A0A8B0GRA3	Phage holin family protein	NA
UHGV-1397340_19	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-1397340_19	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1397340_19	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1397340_21	PHROG	phrog_2150	terminase	head and packaging
UHGV-1397340_21	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-1397340_21	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1397340_21	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1397340_21	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1397340_22	PHROG	phrog_14030	NA	unknown function
UHGV-1397340_22	UniRef90	UniRef90_A0A4R4FEU7	NlpC/P60 domain-containing protein	NA
UHGV-1397340_22	eggNOG-mapper	1123263.AUKY01000029_gene784	NLP P60 protein	NA
UHGV-1397340_22	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1397340_22	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1397340_22	Structural annotation	PF05382, NF040678, COG0791	NA	NA