UHGV-1397807

Genome information

Genome length 19,239 bps

CDS count 26

Completeness 55.64% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-1397807
vOTU ID	vOTU-034298
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0139609
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.01
Jumbo phage	No

Genome content
Genome length	19,239 bps
GC content	30.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	94.53%
Average CDS length	700.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1397807_3	PHROG	phrog_32680	tail fiber protein	tail
UHGV-1397807_3	eggNOG-mapper	1536775.H70737_27160	NA	NA
UHGV-1397807_4	PHROG	phrog_521	tail protein	tail
UHGV-1397807_4	UniRef90	UniRef90_UPI001E2B23B3	YmfQ family protein	NA
UHGV-1397807_4	eggNOG-mapper	500633.CLOHIR_01466	NA	NA
UHGV-1397807_4	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1397807_4	COG	COG3778	NA	NA
UHGV-1397807_4	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1397807_5	PHROG	phrog_6	baseplate protein	tail
UHGV-1397807_5	UniRef90	UniRef90_UPI001E642174	baseplate J/gp47 family protein	NA
UHGV-1397807_5	eggNOG-mapper	272563.CD630_13710	Baseplate J-like protein	NA
UHGV-1397807_5	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1397807_5	COG	COG3299	NA	NA
UHGV-1397807_5	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1397807_6	PHROG	phrog_120	baseplate protein	tail
UHGV-1397807_6	UniRef90	UniRef90_UPI001E31CED0	NA	NA
UHGV-1397807_6	eggNOG-mapper	272563.CD630_13700	NA	NA
UHGV-1397807_6	Pfam	PF10934	NA	DUF2634
UHGV-1397807_6	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1397807_7	PHROG	phrog_579	NA	unknown function
UHGV-1397807_7	UniRef90	UniRef90_UPI001D124974	NA	NA
UHGV-1397807_7	Pfam	PF10844	NA	DUF2577
UHGV-1397807_7	Structural annotation	PF10844, TIGR00523, COG0361	NA	NA
UHGV-1397807_8	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1397807_8	PHROG	phrog_400	tail protein	tail
UHGV-1397807_8	UniRef90	UniRef90_UPI001E5D10E3	NlpC/P60 family protein	NA
UHGV-1397807_8	eggNOG-mapper	500633.CLOHIR_01462	NLP P60 protein	NA
UHGV-1397807_8	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1397807_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1397807_8	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-1397807_9	KOfam	K19223	lytF, cwlE; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-]	NA
UHGV-1397807_9	PHROG	phrog_380	endolysin	lysis
UHGV-1397807_9	UniRef90	UniRef90_UPI001E2EFF41	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1397807_9	eggNOG-mapper	1437363.A0A090C751_9CAUD	lytic transglycosylase activity	NA
UHGV-1397807_9	Pfam	PF01476	LysM domain	LysM
UHGV-1397807_9	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-1397807_10	PHROG	phrog_23574	tail length tape measure protein	tail
UHGV-1397807_10	UniRef90	UniRef90_A0A090C6U5	Putative tail tape measure protein	NA
UHGV-1397807_10	eggNOG-mapper	500633.CLOHIR_00376	tape measure	NA
UHGV-1397807_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1397807_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1397807_11	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-1397807_11	UniRef90	UniRef90_UPI001E4F528D	phage portal protein	NA
UHGV-1397807_11	eggNOG-mapper	1294142.CINTURNW_0299	NA	NA
UHGV-1397807_11	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1397807_11	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-1397807_12	PHROG	phrog_365	tail protein	tail
UHGV-1397807_12	UniRef90	UniRef90_UPI001E580251	phage tail tube protein	NA
UHGV-1397807_12	eggNOG-mapper	1449126.JQKL01000051_gene3163	Phage tail tube protein	NA
UHGV-1397807_12	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1397807_12	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1397807_13	PHROG	phrog_1480	tail sheath	tail
UHGV-1397807_13	UniRef90	UniRef90_UPI001E31C311	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-1397807_13	eggNOG-mapper	1449126.JQKL01000051_gene3164	Phage tail sheath protein subtilisin-like domain	NA
UHGV-1397807_13	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1397807_13	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1397807_13	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1397807_14	PHROG	phrog_525	NA	unknown function
UHGV-1397807_14	eggNOG-mapper	1294142.CINTURNW_0296	NA	NA
UHGV-1397807_14	Pfam	PF20765	NA	DUF6838
UHGV-1397807_14	Structural annotation	PF20765, COG3167	NA	NA
UHGV-1397807_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1397807_15	UniRef90	UniRef90_UPI0010334CC7	HK97 gp10 family phage protein	NA
UHGV-1397807_15	eggNOG-mapper	1286171.EAL2_c11090	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1397807_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1397807_15	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1397807_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-1397807_16	UniRef90	UniRef90_UPI001E40B56C	phage head closure protein	NA
UHGV-1397807_16	eggNOG-mapper	500633.CLOHIR_00369	Phage head-tail joining protein	NA
UHGV-1397807_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1397807_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1397807_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1397807_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1397807_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1397807_17	UniRef90	UniRef90_UPI0006BBDE11	head-tail connector protein	NA
UHGV-1397807_17	eggNOG-mapper	1286171.EAL2_c11070	Phage gp6-like head-tail connector protein	NA
UHGV-1397807_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1397807_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1397807_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1397807_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-1397807_18	UniRef90	UniRef90_A0A069AVH7	Phage major capsid protein, HK97 family	NA
UHGV-1397807_18	eggNOG-mapper	536232.CLM_2054	Phage major capsid protein, HK97 family	NA
UHGV-1397807_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1397807_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1397807_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1397807_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1397807_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1397807_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1397807_19	UniRef90	UniRef90_A0A069A9F2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1397807_19	eggNOG-mapper	1382358.JHVN01000024_gene1706	Serine dehydrogenase proteinase	NA
UHGV-1397807_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1397807_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1397807_19	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1397807_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-1397807_20	UniRef90	UniRef90_T4VN36	Phage portal protein, HK97 family	NA
UHGV-1397807_20	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-1397807_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1397807_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1397807_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1397807_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1397807_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1397807_21	UniRef90	UniRef90_A7GI73	Putative phage terminase, large subunit	NA
UHGV-1397807_21	eggNOG-mapper	447909.A6M948_9VIRU	Phage Terminase	NA
UHGV-1397807_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1397807_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1397807_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1397807_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1397807_22	UniRef90	UniRef90_A0A1C5VH27	Phage terminase, small subunit	NA
UHGV-1397807_22	eggNOG-mapper	1120971.AUCA01000043_gene1169	Phage terminase, small subunit	NA
UHGV-1397807_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1397807_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1397807_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1397807_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1397807_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1397807_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1397807_23	UniRef90	UniRef90_A0A1C6C0K5	HNH endonuclease	NA
UHGV-1397807_23	eggNOG-mapper	1567013.A0A0A7RTK8_9CAUD	HNH endonuclease	NA
UHGV-1397807_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1397807_23	Structural annotation	PF05766	NA	NA
UHGV-1397807_24	PHROG	phrog_1558	NA	unknown function
UHGV-1397807_24	UniRef90	UniRef90_I2E8Y5	Gp40	NA
UHGV-1397807_24	eggNOG-mapper	1187894.I2E8Y5_9CAUD	NA	NA
UHGV-1397807_24	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-1397807_25	PHROG	phrog_824	NA	unknown function
UHGV-1397807_25	UniRef90	UniRef90_A0A1C5YEI9	VRR-NUC domain	NA
UHGV-1397807_25	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-1397807_25	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1397807_25	Structural annotation	PF08774	NA	NA