UHGV-1398028

Genome information

Genome length 36,380 bps

CDS count 44

Completeness 98.86% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-1398028
vOTU ID	vOTU-009934
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0247803
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.55
Jumbo phage	No

Genome content
Genome length	36,380 bps
GC content	37.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	87.55%
Average CDS length	727.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1398028_1	KOfam	K14059	int; integrase	NA
UHGV-1398028_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1398028_1	UniRef90	UniRef90_C4FQH3	Site-specific recombinase, phage integrase family	NA
UHGV-1398028_1	eggNOG-mapper	546273.VEIDISOL_01041	Phage integrase family	NA
UHGV-1398028_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1398028_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1398028_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1398028_2	UniRef90	UniRef90_C4FQH4	HTH cro/C1-type domain-containing protein	NA
UHGV-1398028_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1398028_4	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1398028_4	UniRef90	UniRef90_A0A5C1KBZ7	HNH endonuclease	NA
UHGV-1398028_4	eggNOG-mapper	546273.VEIDISOL_01044	NA	NA
UHGV-1398028_4	Structural annotation	PF17375	NA	NA
UHGV-1398028_9	KOfam	K03090	sigB; RNA polymerase sigma-B factor	NA
UHGV-1398028_9	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1398028_9	UniRef90	UniRef90_C4FQI3	Sigma-70 region 2	NA
UHGV-1398028_9	eggNOG-mapper	546273.VEIDISOL_01050	sigma factor activity	NA
UHGV-1398028_9	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1398028_9	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1398028_9	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1398028_9	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1398028_9	Structural annotation	PF04545, PF04542, MF_00961, TIGR02850, COG1191	NA	NA
UHGV-1398028_11	Structural annotation	PF07374	NA	NA
UHGV-1398028_12	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1398028_12	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1398028_12	UniRef90	UniRef90_C4FQI5	Terminase small subunit	NA
UHGV-1398028_12	eggNOG-mapper	546273.VEIDISOL_01053	Terminase small subunit	NA
UHGV-1398028_12	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1398028_12	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1398028_12	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1398028_13	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-1398028_13	UniRef90	UniRef90_A0A3A6WL61	Terminase	NA
UHGV-1398028_13	eggNOG-mapper	546273.VEIDISOL_01054	TIGRFAM Phage	NA
UHGV-1398028_13	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1398028_13	COG	COG5410	NA	NA
UHGV-1398028_13	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1398028_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-1398028_14	UniRef90	UniRef90_A0A2S7YX49	Phage portal protein	NA
UHGV-1398028_14	eggNOG-mapper	546273.VEIDISOL_01055	Portal protein	NA
UHGV-1398028_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1398028_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1398028_15	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1398028_15	UniRef90	UniRef90_C4FQI8	Phage protein F-like protein	NA
UHGV-1398028_15	eggNOG-mapper	546273.VEIDISOL_01056	Phage Mu protein F like protein	NA
UHGV-1398028_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1398028_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1398028_15	COG	COG2369	NA	NA
UHGV-1398028_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1398028_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1398028_16	UniRef90	UniRef90_C4FQI9	Phage minor structural protein GP20	NA
UHGV-1398028_16	eggNOG-mapper	1111454.HMPREF1250_0176	Phage minor structural protein GP20	NA
UHGV-1398028_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1398028_16	Structural annotation	PF06810	NA	NA
UHGV-1398028_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-1398028_17	UniRef90	UniRef90_A0A2S7YX03	N4-gp56 family major capsid protein	NA
UHGV-1398028_17	eggNOG-mapper	546273.VEIDISOL_01058	NA	NA
UHGV-1398028_17	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1398028_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1398028_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1398028_18	eggNOG-mapper	546273.VEIDISOL_01059	NA	NA
UHGV-1398028_18	Structural annotation	PF05135	NA	NA
UHGV-1398028_19	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1398028_19	UniRef90	UniRef90_UPI00110CBC63	ABC transporter ATP-binding protein	NA
UHGV-1398028_19	eggNOG-mapper	546273.VEIDISOL_01060	NA	NA
UHGV-1398028_19	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1398028_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1398028_20	UniRef90	UniRef90_C4FQJ3	Putative phage protein, HK97 gp10 family	NA
UHGV-1398028_20	eggNOG-mapper	546273.VEIDISOL_01061	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1398028_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1398028_20	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-1398028_21	PHROG	phrog_525	NA	unknown function
UHGV-1398028_21	UniRef90	UniRef90_A0A841R2B4	Ribosomal protein L39E	NA
UHGV-1398028_21	eggNOG-mapper	546273.VEIDISOL_01062	NA	NA
UHGV-1398028_21	Pfam	PF20765	NA	DUF6838
UHGV-1398028_21	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1398028_22	PHROG	phrog_966	NA	unknown function
UHGV-1398028_23	PHROG	phrog_279	tail sheath	tail
UHGV-1398028_23	UniRef90	UniRef90_U7UPL4	Phage tail sheath protein	NA
UHGV-1398028_23	eggNOG-mapper	546273.VEIDISOL_01064	Phage tail sheath C-terminal domain	NA
UHGV-1398028_23	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1398028_23	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1398028_23	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1398028_23	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1398028_24	PHROG	phrog_365	tail protein	tail
UHGV-1398028_24	UniRef90	UniRef90_UPI0015F66976	phage tail tube protein	NA
UHGV-1398028_24	eggNOG-mapper	1111454.HMPREF1250_0167	Phage tail tube protein	NA
UHGV-1398028_24	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1398028_24	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1398028_25	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1398028_25	UniRef90	UniRef90_A0A3A6WBZ8	Phage portal protein	NA
UHGV-1398028_25	eggNOG-mapper	1321779.HMPREF1984_01297	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1398028_25	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1398028_25	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1398028_26	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1398028_26	UniRef90	UniRef90_A0A3A6W8X2	TMP_3 domain-containing protein	NA
UHGV-1398028_26	eggNOG-mapper	546273.VEIDISOL_01067	tape measure	NA
UHGV-1398028_26	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1398028_26	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1398028_26	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1398028_26	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1398028_27	PHROG	phrog_380	endolysin	lysis
UHGV-1398028_27	UniRef90	UniRef90_C4FPA1	LysM domain-containing protein	NA
UHGV-1398028_27	eggNOG-mapper	546273.VEIDISOL_01068	PFAM LysM domain	NA
UHGV-1398028_27	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1398028_27	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-1398028_28	PHROG	phrog_400	tail protein	tail
UHGV-1398028_28	UniRef90	UniRef90_UPI000CF8ACDE	phage tail tip lysozyme	NA
UHGV-1398028_28	eggNOG-mapper	546273.VEIDISOL_01069	PFAM Phage late control gene D protein (GPD)	NA
UHGV-1398028_28	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1398028_28	Structural annotation	PF14594, PF05382, NF033848, COG4379	NA	NA
UHGV-1398028_29	PHROG	phrog_579	NA	unknown function
UHGV-1398028_29	UniRef90	UniRef90_A0A3A6W0I0	NA	NA
UHGV-1398028_29	eggNOG-mapper	546273.VEIDISOL_01070	NA	NA
UHGV-1398028_29	Pfam	PF10844	NA	DUF2577
UHGV-1398028_29	Structural annotation	PF10844	NA	NA
UHGV-1398028_30	PHROG	phrog_120	baseplate protein	tail
UHGV-1398028_30	UniRef90	UniRef90_A0A3A6WE45	NA	NA
UHGV-1398028_30	eggNOG-mapper	546273.VEIDISOL_01071	NA	NA
UHGV-1398028_30	Pfam	PF10934	NA	DUF2634
UHGV-1398028_30	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1398028_30	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1398028_31	PHROG	phrog_6	baseplate protein	tail
UHGV-1398028_31	UniRef90	UniRef90_C4FQK4	Baseplate J-like protein	NA
UHGV-1398028_31	eggNOG-mapper	546273.VEIDISOL_01072	Baseplate J-like protein	NA
UHGV-1398028_31	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1398028_31	COG	COG3299	NA	NA
UHGV-1398028_31	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1398028_32	PHROG	phrog_521	tail protein	tail
UHGV-1398028_32	UniRef90	UniRef90_A0A2S7YX47	NA	NA
UHGV-1398028_32	eggNOG-mapper	546273.VEIDISOL_01073	NA	NA
UHGV-1398028_32	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1398028_32	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1398028_33	UniRef90	UniRef90_A0A011NCC2	Phage tail protein	NA
UHGV-1398028_33	eggNOG-mapper	1120931.KB893937_gene2164	NA	NA
UHGV-1398028_34	eggNOG-mapper	546273.VEIDISOL_01075	NA	NA
UHGV-1398028_34	Structural annotation	PF17813, NF038186	NA	NA
UHGV-1398028_35	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1398028_35	PHROG	phrog_8745	tail fiber protein	tail
UHGV-1398028_35	UniRef90	UniRef90_C4FQK8	Collagen triple helix repeat protein	NA
UHGV-1398028_35	eggNOG-mapper	546273.VEIDISOL_01076	Collagen triple helix repeat (20 copies)	NA
UHGV-1398028_35	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1398028_35	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1398028_37	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1398028_37	PHROG	phrog_819	tail protein	tail
UHGV-1398028_37	UniRef90	UniRef90_C4FQL0	Collagen triple helix repeat protein	NA
UHGV-1398028_37	eggNOG-mapper	546273.VEIDISOL_01078	cell wall organization	NA
UHGV-1398028_37	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1398028_37	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1398028_38	UniRef90	UniRef90_A0A3A6W8W0	Collagen-like protein	NA
UHGV-1398028_42	PHROG	phrog_26249	NA	unknown function
UHGV-1398028_42	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-1398028_42	eggNOG-mapper	546273.VEIDISOL_01083	LysM domain	NA
UHGV-1398028_42	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-1398028_42	COG	COG1388	LysM repeat	NA
UHGV-1398028_42	Structural annotation	PF21277	NA	NA
UHGV-1398028_43	eggNOG-mapper	546273.VEIDISOL_01084	NA	NA