UHGV-1398067

Genome information

Genome length 32,458 bps

CDS count 50

Completeness 76.87% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-1398067
vOTU ID	vOTU-024925
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0225362
BioSample	SAMEA3449340
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.5
Jumbo phage	No

Genome content
Genome length	32,458 bps
GC content	53.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	89.66%
Average CDS length	584.64 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1398067_1	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-1398067_1	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1398067_2	UniRef90	UniRef90_A0A843GUM6	Membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-1398067_2	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-1398067_2	Structural annotation	PF17516, NF007197	NA	NA
UHGV-1398067_3	PHROG	phrog_4433	NA	unknown function
UHGV-1398067_3	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-1398067_3	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-1398067_3	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1398067_4	Structural annotation	PF10743, NF033787	NA	NA
UHGV-1398067_8	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1398067_8	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-1398067_8	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-1398067_8	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1398067_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1398067_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1398067_9	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-1398067_9	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1398067_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1398067_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1398067_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1398067_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1398067_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1398067_10	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1398067_10	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1398067_10	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-1398067_10	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-1398067_10	Pfam	PF19808	NA	DUF6291
UHGV-1398067_10	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1398067_10	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1398067_10	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-1398067_11	Structural annotation	PF11417	NA	NA
UHGV-1398067_12	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-1398067_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1398067_17	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1398067_17	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1398067_17	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-1398067_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1398067_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1398067_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1398067_18	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1398067_18	UniRef90	UniRef90_A0A6L5TFB3	Radical SAM protein	NA
UHGV-1398067_18	eggNOG-mapper	552396.HMPREF0863_02707	radical SAM domain protein	NA
UHGV-1398067_18	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1398067_18	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-1398067_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1398067_19	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1398067_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1398067_20	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1398067_20	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-1398067_20	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-1398067_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1398067_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1398067_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1398067_20	COG	COG0863	DNA modification methylase	NA
UHGV-1398067_20	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1398067_21	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1398067_21	UniRef90	UniRef90_A0A845RCL8	Helix-turn-helix domain-containing protein	NA
UHGV-1398067_21	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-1398067_21	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1398067_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1398067_22	PHROG	phrog_10250	NA	unknown function
UHGV-1398067_22	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-1398067_22	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1398067_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1398067_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1398067_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1398067_22	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1398067_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-1398067_23	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-1398067_23	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1398067_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1398067_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1398067_25	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1398067_25	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-1398067_25	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1398067_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1398067_25	COG	COG2369	NA	NA
UHGV-1398067_25	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1398067_26	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1398067_26	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1398067_26	UniRef90	UniRef90_UPI001D0E8318	helix-turn-helix transcriptional regulator	NA
UHGV-1398067_26	eggNOG-mapper	1117108.PAALTS15_13457	Transcriptional regulator	NA
UHGV-1398067_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1398067_26	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1398067_26	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-1398067_27	Structural annotation	PF07342	NA	NA
UHGV-1398067_29	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1398067_29	UniRef90	UniRef90_UPI00137B411D	ORF6C domain-containing protein	NA
UHGV-1398067_29	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-1398067_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1398067_29	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1398067_29	COG	COG3617	Prophage antirepressor	NA
UHGV-1398067_29	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-1398067_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1398067_30	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-1398067_30	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1398067_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1398067_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1398067_32	Structural annotation	PF06810	NA	NA
UHGV-1398067_33	PHROG	phrog_544	major head protein	head and packaging
UHGV-1398067_33	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-1398067_33	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1398067_33	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1398067_35	PHROG	phrog_17977	NA	unknown function
UHGV-1398067_35	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-1398067_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1398067_36	Structural annotation	PF13554	NA	NA
UHGV-1398067_37	PHROG	phrog_885	major tail protein	tail
UHGV-1398067_37	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1398067_37	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1398067_40	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-1398067_40	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-1398067_40	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-1398067_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1398067_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1398067_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1398067_40	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1398067_41	UniRef90	UniRef90_A0A415UCK7	MtfA protein	NA
UHGV-1398067_41	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-1398067_41	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1398067_41	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1398067_42	PHROG	phrog_3558	tail protein	tail
UHGV-1398067_42	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-1398067_42	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-1398067_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1398067_42	COG	COG4926	Phage-related protein	NA
UHGV-1398067_42	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1398067_44	KOfam	K07273	acm; lysozyme	NA
UHGV-1398067_44	PHROG	phrog_291	endolysin	lysis
UHGV-1398067_44	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-1398067_44	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-1398067_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1398067_44	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1398067_44	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-1398067_45	PHROG	phrog_1863	NA	unknown function
UHGV-1398067_45	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-1398067_46	PHROG	phrog_15303	NA	unknown function
UHGV-1398067_48	PHROG	phrog_20016	NA	unknown function
UHGV-1398067_48	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1398067_48	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1398067_48	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1398067_49	Structural annotation	PF12510	NA	NA