UHGV-1398100

Genome information

Genome length 38,096 bps

CDS count 61

Completeness 86.38% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-1398100
vOTU ID	vOTU-024926
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0257947
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	0.57
Jumbo phage	No

Genome content
Genome length	38,096 bps
GC content	55.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.47%
Average CDS length	563.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1398100_1	PHROG	phrog_24113	NA	unknown function
UHGV-1398100_1	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-1398100_1	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1398100_2	PHROG	phrog_371	major head protein	head and packaging
UHGV-1398100_2	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-1398100_2	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-1398100_2	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1398100_2	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1398100_3	PHROG	phrog_12105	NA	unknown function
UHGV-1398100_3	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1398100_4	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1398100_4	PHROG	phrog_6320	tail fiber protein	tail
UHGV-1398100_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1398100_7	PHROG	phrog_7037	tail fiber protein	tail
UHGV-1398100_8	PHROG	phrog_22773	NA	unknown function
UHGV-1398100_8	UniRef90	UniRef90_UPI001958116B	toxin-antitoxin system toxin subunit	NA
UHGV-1398100_8	eggNOG-mapper	742738.HMPREF9460_03965	NA	NA
UHGV-1398100_9	PHROG	phrog_2310	NA	unknown function
UHGV-1398100_10	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1398100_10	PHROG	phrog_18955	NA	unknown function
UHGV-1398100_10	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-1398100_10	eggNOG-mapper	1121344.JHZO01000003_gene744	Ami_3	NA
UHGV-1398100_10	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-1398100_10	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1398100_10	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1398100_10	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-1398100_11	PHROG	phrog_1129	holin	lysis
UHGV-1398100_11	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-1398100_11	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1398100_11	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1398100_11	Structural annotation	PF06946	NA	NA
UHGV-1398100_12	PHROG	phrog_4105	NA	unknown function
UHGV-1398100_12	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-1398100_13	PHROG	phrog_16040	virion structural protein	head and packaging
UHGV-1398100_13	UniRef90	UniRef90_A0A174SCI3	Reovirus sigma C capsid protein	NA
UHGV-1398100_13	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-1398100_14	eggNOG-mapper	1227349.C170_22575	Fibronectin type 3 domain	NA
UHGV-1398100_14	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1398100_14	Structural annotation	PF17166, NF038367, COG2033	NA	NA
UHGV-1398100_16	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1398100_16	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-1398100_16	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1398100_17	eggNOG-mapper	1226322.HMPREF1545_00786	NA	NA
UHGV-1398100_18	UniRef90	UniRef90_U2AS96	MuF_C domain-containing protein	NA
UHGV-1398100_18	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-1398100_19	PHROG	phrog_1758	acetyltransferase	other
UHGV-1398100_19	UniRef90	UniRef90_A0A174ISH4	N-acetyltransferase domain-containing protein	NA
UHGV-1398100_19	eggNOG-mapper	1487921.DP68_15595	transferase activity, transferring acyl groups	NA
UHGV-1398100_19	COG	COG3153	Predicted N-acetyltransferase YhbS	NA
UHGV-1398100_19	Structural annotation	PF13673, MF_00824, NF010241, COG3153	NA	NA
UHGV-1398100_21	PHROG	phrog_21664	NA	unknown function
UHGV-1398100_21	UniRef90	UniRef90_A0A174IZW3	Preprotein translocase subunit SecB	NA
UHGV-1398100_21	eggNOG-mapper	1280689.AUJC01000016_gene85	protein tetramerization	NA
UHGV-1398100_21	COG	COG1952	Preprotein translocase subunit SecB	NA
UHGV-1398100_21	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA
UHGV-1398100_22	KOfam	K14059	int; integrase	NA
UHGV-1398100_22	PHROG	phrog_1	integrase	integration and excision
UHGV-1398100_22	UniRef90	UniRef90_A0A174DBH0	Site-specific tyrosine recombinase XerC	NA
UHGV-1398100_22	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-1398100_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1398100_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1398100_22	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1398100_23	UniRef90	UniRef90_UPI001C119CBB	copper amine oxidase N-terminal domain-containing protein	NA
UHGV-1398100_23	eggNOG-mapper	1226322.HMPREF1545_01476	Copper amine oxidase N-terminal domain	NA
UHGV-1398100_23	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-1398100_24	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1398100_24	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1398100_24	UniRef90	UniRef90_UPI001921ACBC	XRE family transcriptional regulator	NA
UHGV-1398100_24	eggNOG-mapper	887929.HMP0721_0588	Cytoplasmic, score 8.87	NA
UHGV-1398100_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1398100_24	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1398100_24	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1398100_24	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-1398100_25	UniRef90	UniRef90_A0A351QWV2	Transcriptional regulator	NA
UHGV-1398100_25	eggNOG-mapper	1051631.F8HGP8_9CAUD	NA	NA
UHGV-1398100_25	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-1398100_27	Structural annotation	PF20385, NF040556	NA	NA
UHGV-1398100_32	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-1398100_35	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1398100_35	PHROG	phrog_9562	NA	unknown function
UHGV-1398100_35	UniRef90	UniRef90_A0A6N3FDD3	Pentapeptide repeats (8 copies)	NA
UHGV-1398100_35	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-1398100_35	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1398100_35	Pfam	PF19062	NA	DUF5758
UHGV-1398100_35	COG	COG1357	NA	NA
UHGV-1398100_35	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-1398100_36	eggNOG-mapper	537013.CLOSTMETH_01718	NA	NA
UHGV-1398100_37	Structural annotation	PF09943	NA	NA
UHGV-1398100_39	PHROG	phrog_862	NA	unknown function
UHGV-1398100_39	eggNOG-mapper	279238.Saro_3022	NA	NA
UHGV-1398100_39	Structural annotation	PF05037, COG2965	NA	NA
UHGV-1398100_40	PHROG	phrog_15768	NA	unknown function
UHGV-1398100_40	UniRef90	UniRef90_UPI00189C2664	NA	NA
UHGV-1398100_40	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-1398100_40	Pfam	PF19808	NA	DUF6291
UHGV-1398100_40	Structural annotation	PF19808	NA	NA
UHGV-1398100_41	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1398100_41	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1398100_41	UniRef90	UniRef90_UPI0018973262	AAA family ATPase	NA
UHGV-1398100_41	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-1398100_41	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1398100_41	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1398100_41	COG	COG0305	Replicative DNA helicase	NA
UHGV-1398100_41	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1398100_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1398100_43	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1398100_43	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-1398100_43	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-1398100_43	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1398100_44	Structural annotation	PF12759	NA	NA
UHGV-1398100_45	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1398100_45	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1398100_45	UniRef90	UniRef90_UPI0018A8D167	DNA cytosine methyltransferase	NA
UHGV-1398100_45	eggNOG-mapper	903814.ELI_3130	C-5 cytosine-specific DNA methylase	NA
UHGV-1398100_45	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1398100_45	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1398100_45	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1398100_45	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1398100_46	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-1398100_46	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-1398100_46	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1398100_48	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-1398100_50	PHROG	phrog_25732	NA	unknown function
UHGV-1398100_50	UniRef90	UniRef90_UPI001898061F	NA	NA
UHGV-1398100_51	Structural annotation	NF000937	NA	NA
UHGV-1398100_53	PHROG	phrog_38832	NA	unknown function
UHGV-1398100_53	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-1398100_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1398100_57	UniRef90	UniRef90_UPI001899C2C3	helix-turn-helix domain-containing protein	NA
UHGV-1398100_57	eggNOG-mapper	1378168.N510_02302	Transcriptional	NA
UHGV-1398100_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1398100_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1398100_57	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1398100_59	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1398100_59	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-1398100_59	UniRef90	UniRef90_U2R0P8	DNA-binding helix-turn-helix protein	NA
UHGV-1398100_59	eggNOG-mapper	1226322.HMPREF1545_02890	Helix-turn-helix XRE-family like proteins	NA
UHGV-1398100_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1398100_59	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1398100_61	AcrCatalog	cluster_2194	NA	NA