UHGV-1398139

Genome information

Genome length 18,148 bps

CDS count 21

Completeness 54.62% (medium-quality)

geNomad score 0.9831

Prediction confidence Confident

Genome information
Genome ID	UHGV-1398139
vOTU ID	vOTU-034305
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0129536
BioSample	SAMEA2738137
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9831
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.26
Jumbo phage	No

Genome content
Genome length	18,148 bps
GC content	40.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	97.60%
Average CDS length	848.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1398139_1	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1398139_1	UniRef90	UniRef90_A0A414CIM9	POU-specific domain-containing protein	NA
UHGV-1398139_1	eggNOG-mapper	1005705.HMPREF9967_1038	Phage terminase, small subunit	NA
UHGV-1398139_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1398139_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1398139_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1398139_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1398139_2	UniRef90	UniRef90_A0A7G1IQ86	Terminase	NA
UHGV-1398139_2	eggNOG-mapper	888049.HMPREF8578_0694	Terminase	NA
UHGV-1398139_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1398139_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1398139_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1398139_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1398139_3	PHROG	phrog_2955	NA	unknown function
UHGV-1398139_3	UniRef90	UniRef90_A0A062WVS8	NA	NA
UHGV-1398139_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-1398139_4	UniRef90	UniRef90_UPI001CBC02E6	phage portal protein	NA
UHGV-1398139_4	eggNOG-mapper	888049.HMPREF8578_0696	Phage portal protein	NA
UHGV-1398139_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1398139_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1398139_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1398139_4	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1398139_5	KOfam	K06904	NA	NA
UHGV-1398139_5	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1398139_5	UniRef90	UniRef90_E6KKD2	Phage prohead protease, HK97 family	NA
UHGV-1398139_5	eggNOG-mapper	644007.C5J962_9CAUD	peptidase activity	NA
UHGV-1398139_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1398139_5	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1398139_5	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1398139_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-1398139_6	UniRef90	UniRef90_E6KKD3	Phage major capsid protein, HK97 family	NA
UHGV-1398139_6	eggNOG-mapper	888049.HMPREF8578_0698	capsid protein	NA
UHGV-1398139_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1398139_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1398139_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1398139_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1398139_7	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-1398139_7	UniRef90	UniRef90_A0A0P0N6K2	Phage transcriptional terminator	NA
UHGV-1398139_7	eggNOG-mapper	1405498.SSIM_04855	Rho termination factor, N-terminal domain	NA
UHGV-1398139_8	PHROG	phrog_2550	NA	unknown function
UHGV-1398139_8	UniRef90	UniRef90_A0A081R3E6	Prophage pi2 protein 35	NA
UHGV-1398139_8	eggNOG-mapper	888049.HMPREF8578_0700	NA	NA
UHGV-1398139_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1398139_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1398139_9	UniRef90	UniRef90_UPI000B58A5F0	phage head closure protein	NA
UHGV-1398139_9	eggNOG-mapper	888049.HMPREF8578_0701	head-tail adaptor	NA
UHGV-1398139_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1398139_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1398139_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1398139_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1398139_10	UniRef90	UniRef90_A0A098ANM6	Bacteriophage pi2 protein 37	NA
UHGV-1398139_10	eggNOG-mapper	644007.C5J967_9CAUD	exonuclease activity	NA
UHGV-1398139_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1398139_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1398139_11	PHROG	phrog_78	tail terminator	connector
UHGV-1398139_11	UniRef90	UniRef90_T0U477	Prophage pi2 protein 38	NA
UHGV-1398139_11	eggNOG-mapper	644007.C5J968_9CAUD	aminopeptidase activity	NA
UHGV-1398139_11	Structural annotation	PF20765	NA	NA
UHGV-1398139_12	PHROG	phrog_88	major tail protein	tail
UHGV-1398139_12	UniRef90	UniRef90_E6KKD9	Phage major tail protein, phi13 family	NA
UHGV-1398139_12	eggNOG-mapper	888049.HMPREF8578_0704	phage major tail protein, phi13 family	NA
UHGV-1398139_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1398139_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1398139_13	PHROG	phrog_709	NA	unknown function
UHGV-1398139_13	UniRef90	UniRef90_A0A0E4CSV4	Prophage pi2 protein 40	NA
UHGV-1398139_13	eggNOG-mapper	888049.HMPREF8578_0705	NA	NA
UHGV-1398139_13	Structural annotation	PF11836	NA	NA
UHGV-1398139_14	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1398139_14	UniRef90	UniRef90_C5J971	PhageMin_Tail domain-containing protein	NA
UHGV-1398139_14	eggNOG-mapper	644007.C5J971_9CAUD	peptidoglycan catabolic process	NA
UHGV-1398139_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1398139_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1398139_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1398139_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1398139_15	UniRef90	UniRef90_A0A1F0TGE5	Phage tail protein	NA
UHGV-1398139_15	eggNOG-mapper	888049.HMPREF8578_0707	NA	NA
UHGV-1398139_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1398139_16	PHROG	phrog_1330	tail protein	tail
UHGV-1398139_16	UniRef90	UniRef90_F9PY45	Phage minor structural protein, N-terminal domain protein	NA
UHGV-1398139_16	eggNOG-mapper	1035189.HMPREF9954_1922	Chaperone of endosialidase	NA
UHGV-1398139_16	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1398139_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1398139_16	COG	COG4926	Phage-related protein	NA
UHGV-1398139_16	Structural annotation	PF14594, PF00629, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-1398139_17	PHROG	phrog_12683	NA	unknown function
UHGV-1398139_17	UniRef90	UniRef90_A0A081R6K4	ATP synthase F0 sector subunit C	NA
UHGV-1398139_17	eggNOG-mapper	1095737.HMPREF1110_1748	NA	NA
UHGV-1398139_18	PHROG	phrog_1554	NA	unknown function
UHGV-1398139_18	UniRef90	UniRef90_A0A139Q9H9	NA	NA
UHGV-1398139_18	eggNOG-mapper	1035189.HMPREF9954_1920	NA	NA
UHGV-1398139_18	Structural annotation	PF07104	NA	NA
UHGV-1398139_19	PHROG	phrog_199	holin	lysis
UHGV-1398139_19	UniRef90	UniRef90_A0A1S5SD95	Holin 1	NA
UHGV-1398139_19	eggNOG-mapper	413066.A1EAB5_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-1398139_19	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1398139_19	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1398139_19	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1398139_20	KOfam	K00689	E2.4.1.5; dextransucrase [EC:2.4.1.5]	NA
UHGV-1398139_20	PHROG	phrog_1110	endolysin	lysis
UHGV-1398139_20	UniRef90	UniRef90_UPI00066DC627	N-acetylmuramoyl-L-alanine amidase family protein	NA
UHGV-1398139_20	eggNOG-mapper	1054460.SPPN_05425	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1398139_20	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1398139_20	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1398139_20	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-1398139_20	Structural annotation	PF19127, PF01510, TIGR04035, COG5263	NA	NA
UHGV-1398139_21	PHROG	phrog_1529	NA	unknown function
UHGV-1398139_21	UniRef90	UniRef90_A0A062WUP7	DNA-binding protein	NA
UHGV-1398139_21	eggNOG-mapper	1035189.HMPREF9954_1916	NA	NA